Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0438
         (808 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    27   0.18 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    26   0.31 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    26   0.41 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.41 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.7  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.7  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 355 SISTACSSQSEVFPGSVSSHCAASLR*ATIEI*GFLVQVVGQHGL 221
           S++  C+  SE+FPG  S+   +S   A ++   + V  +G HGL
Sbjct: 5   SLTAGCNPDSELFPGFGSTCGGSSSSMAYLKSAPYPVPGLGLHGL 49


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 460 RWGARPGWDRTPRPGCCRSS 401
           R  ARPG   TPR GC R+S
Sbjct: 42  RRAARPGVVTTPRWGCARAS 61


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +2

Query: 407 PAATWPWCSVPTWPGPPAAKCPCKRSRQSTL-SPTHPGEP 523
           P A   WC    W  PP A+     +R+  L S    G P
Sbjct: 113 PDAMGKWCPRREWSSPPDARAASDAARRGVLYSSVFLGSP 152


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +2

Query: 407 PAATWPWCSVPTWPGPPAAKCPCKRSRQSTL-SPTHPGEP 523
           P A   WC    W  PP A+     +R+  L S    G P
Sbjct: 269 PDAMGKWCPRREWSSPPDARAASDAARRGVLYSSVFLGSP 308


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 708 IFAFYLLDSHNLIMVS 661
           I+AF  +D HN  M+S
Sbjct: 208 IYAFATIDPHNFNMIS 223


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 262 FQSWPNAEKPRNV 300
           F  W N+++PRNV
Sbjct: 21  FVRWLNSQQPRNV 33


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 376 PSTETGTSISTACSSQ 329
           PSTE GT+I T+   Q
Sbjct: 458 PSTELGTNIYTSSKRQ 473


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 348 QQLVVLNRKSFQDQYLHIA 292
           QQL+ L +K    QYL IA
Sbjct: 125 QQLLALEKKFRDKQYLSIA 143


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 730 HFIYVEFYFCFLFVRFT 680
           +F Y+   FC  F+ FT
Sbjct: 260 YFYYMHLLFCCAFIIFT 276


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 110 VTVKQLQNSCNQGEPISFRDDPHIAA 187
           +TVK LQN   Q   +S   DP + +
Sbjct: 83  MTVKHLQNLQRQQAAMSAATDPSVVS 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,039
Number of Sequences: 336
Number of extensions: 3473
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)