Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0437
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.3  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.3  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   9.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 566 GN-PPLTPKAWPTSSARTIYNTRHLS 640
           GN PPLTP   P S   T+ +  + S
Sbjct: 112 GNVPPLTPSPGPPSHPYTVISNGYSS 137


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 530 HHCPIPYALRVVGNPPLTPKAWP 598
           HH  +P  + +   P LTP A P
Sbjct: 368 HHDMLPETMHMGMGPSLTPLASP 390


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 625 YATFIFVIKGPFYLVSHPH 681
           +A F+ +  GP+ +++ PH
Sbjct: 421 FAKFMPLYSGPYKIIAKPH 439


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 530 HHCPIPYALRVVGNPPLTPKAWP 598
           HH  +P  + +   P LTP A P
Sbjct: 368 HHDMLPETMHMGMGPSLTPLASP 390


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 650 KVRFIWYHI 676
           K  F+WYHI
Sbjct: 166 KTAFLWYHI 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,712
Number of Sequences: 336
Number of extensions: 2947
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)