Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0434
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    28   0.11 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   4.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   4.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   7.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 495 CKNVPLKFWRECDERSCQNCF 433
           C+N     WRECD+ +C+  F
Sbjct: 878 CENGKPTCWRECDKATCEKLF 898


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 686 SRHPQRTCSYTXVSIAVYL*AIXGDVCTSLALWHTFPRG 802
           SRHP  +  +  +S A +   I  D  TS A W     G
Sbjct: 158 SRHPYESWPFNTMSGATHHGGIKSDSVTSNAWWDVHSTG 196


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 486 VPLKFWRECDERSCQNCFIVNLMLYSYLMYI 394
           VP+  ++  D R+  N F+VNL +   ++ +
Sbjct: 89  VPIVIFKTKDMRNSTNIFLVNLSVADLMVLL 119


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 486 VPLKFWRECDERSCQNCFIVNLMLYSYLMYI 394
           VP+  ++  D R+  N F+VNL +   ++ +
Sbjct: 89  VPIVIFKTKDMRNSTNIFLVNLSVADLMVLL 119


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -2

Query: 245 FYFKYC*VLFICRIY-----TLMGSK*VYCYVQ 162
           F+F +C +LF   +Y      L  SK +Y Y Q
Sbjct: 11  FFFSFCCILFFIYLYWQQTSNLTTSKLLYTYRQ 43



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 193 IKV*ILQINNTQQYLK*NEPRRLSIKPDNIEIFCTALKPPCFVAR 327
           IKV IL  N  +  L  +E   LS+KP + EI         F AR
Sbjct: 159 IKVTILHPNIVKLKLDTSEGYTLSVKPRDGEIVANITAKTFFGAR 203


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 247 EPRRLSIKPDNIEIFCTALKPPCFVAR*RHSGTKF 351
           EP R+ IKP +       L  PC V     SG  +
Sbjct: 16  EPHRMQIKPQSPSSSSRILDIPCKVCGDFSSGKHY 50


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 247 EPRRLSIKPDNIEIFCTALKPPCFVAR*RHSGTKF 351
           EP R+ IKP +       L  PC V     SG  +
Sbjct: 16  EPHRMQIKPQSPSSSSRILDIPCKVCGDFSSGKHY 50


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 746 AIXGDVCTSLALWHTF 793
           ++ G VC     WHTF
Sbjct: 475 SMHGGVCDPYTPWHTF 490


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 456 ERSCQNCFIVNLMLYSYLMYIHQ*SRKPM 370
           +++C    I +L+L++ L+Y     + P+
Sbjct: 39  DKNCTIVIIFHLILFAVLLYFASLEKNPL 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,484
Number of Sequences: 336
Number of extensions: 4642
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)