Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0434
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    29   0.87 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    27   4.6  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   4.6  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   8.1  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 303  KAAMFCGQMTSQWHEILVDVSFP*VSYFIG 392
            +A  FCG+M + W  +L DV++P  +Y  G
Sbjct: 1065 RAKKFCGRMANLWRFVL-DVTYPQAAYTTG 1093


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 292 KRFQCYQVLSINVLAHFILNIVEYYLFVEFIL 197
           K +    ++ I +  HFILN++ +  F E++L
Sbjct: 136 KNWTIISIIEIPIKLHFILNVLLFLKFSEYML 167


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 10  DGFELRHIFMFCDKRQLYKISVATFKNQLRLLG 108
           D F+L++I  +CD+R  +  S  +FK  + LLG
Sbjct: 622 DIFDLQNILRYCDERGDFS-SFPSFKKLISLLG 653


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 679 YGFASPTAYL*LYXGEYSSVPVGYTXGRLYILSPVAYLPQ 798
           YG + PTA        YS VP  Y       +SP + +PQ
Sbjct: 709 YGSSMPTANGFYVPNTYSPVPFPYNTSYPPYMSPTSNMPQ 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,932
Number of Sequences: 5004
Number of extensions: 74338
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)