Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0434
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49165| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 28   8.6  

>SB_49165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 398 IYTNEVGNLWK*NVNQNFVPL*RHLATKHGGFSAVQKISM-LSGF 267
           +YTN++G LW   +  N+ P  R    + GG   + K+++ LS F
Sbjct: 244 LYTNQMGFLWPLAIQMNYKPDSRVFTPRDGGHWTLAKLNLQLSDF 288


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 373 YGNETSTKISCHCDVIWPQNMAALVLYKRFQCYQVLSINVLAHFILNIVEYYLFVEF 203
           +  +   +I+C+ D I  +N      Y RF CY VLS    ++F + +  YY+ + F
Sbjct: 281 FHEQLKKQINCNTDHIIHEN------YSRFTCYNVLS----SYFSVTLCIYYILLVF 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,303,322
Number of Sequences: 59808
Number of extensions: 543183
Number of successful extensions: 945
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)