Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0432
(857 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 118 8e-27
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 1e-25
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 1e-25
SB_56| Best HMM Match : Actin (HMM E-Value=0) 114 1e-25
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 114 1e-25
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 1e-25
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 98 7e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 88 1e-17
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 72 7e-13
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 61 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 54 1e-07
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 46 4e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 35 0.074
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 4.8
SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 118 bits (283), Expect = 8e-27
Identities = 54/68 (79%), Positives = 62/68 (91%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
SLYATGRTTG VLD+GDGV+H+VPIYEGFAMPHSIMR D+AGRDV++YLRLLLRKEG
Sbjct: 167 SLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCF 226
Query: 689 RTSAELEI 712
+S+ELEI
Sbjct: 227 HSSSELEI 234
Score = 83.8 bits (198), Expect = 2e-16
Identities = 37/41 (90%), Positives = 41/41 (100%)
Frame = +3
Query: 387 EHPVLLTEAPLNPRRNREKSAEIFFETFNVPALFLSMQAVL 509
+HPVLLTEAPLNPRRNREK+AE+FFETFNVPALF+SMQAVL
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVL 166
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 114 bits (274), Expect = 1e-25
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +3
Query: 261 EEHRXLLSIKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNRE 440
+ R +L++KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 441 KSAEIFFETFNVPALFLSMQAVL 509
K +I FETFN PA+++++QAVL
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVL 141
Score = 100 bits (240), Expect = 1e-21
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
SLYA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD+T YL +L + G +
Sbjct: 142 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSF 201
Query: 689 RTSAELEI 712
T+AE EI
Sbjct: 202 TTTAEREI 209
Score = 61.7 bits (143), Expect = 7e-10
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 109 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPVQKS 267
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 61
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 114 bits (274), Expect = 1e-25
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +3
Query: 261 EEHRXLLSIKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNRE 440
+ R +L++KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANRE 117
Query: 441 KSAEIFFETFNVPALFLSMQAVL 509
K +I FETFN PA+++++QAVL
Sbjct: 118 KMTQIMFETFNSPAMYVAIQAVL 140
Score = 101 bits (241), Expect = 1e-21
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
SLYA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD+T YL +L + G +
Sbjct: 141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 200
Query: 689 RTSAELEI 712
T+AE EI
Sbjct: 201 TTTAEREI 208
Score = 61.7 bits (143), Expect = 7e-10
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 109 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPVQKS 267
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 114 bits (274), Expect = 1e-25
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +3
Query: 261 EEHRXLLSIKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNRE 440
+ R +L++KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANRE 117
Query: 441 KSAEIFFETFNVPALFLSMQAVL 509
K +I FETFN PA+++++QAVL
Sbjct: 118 KMTQIMFETFNSPAMYVAIQAVL 140
Score = 101 bits (241), Expect = 1e-21
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
SLYA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD+T YL +L + G +
Sbjct: 141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 200
Query: 689 RTSAELEI 712
T+AE EI
Sbjct: 201 TTTAEREI 208
Score = 61.7 bits (143), Expect = 7e-10
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 109 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPVQKS 267
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 114 bits (274), Expect = 1e-25
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +3
Query: 261 EEHRXLLSIKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNRE 440
+ R +L++KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 441 KSAEIFFETFNVPALFLSMQAVL 509
K +I FETFN PA+++++QAVL
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVL 141
Score = 101 bits (241), Expect = 1e-21
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
SLYA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD+T YL +L + G +
Sbjct: 142 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 201
Query: 689 RTSAELEI 712
T+AE EI
Sbjct: 202 TTTAEREI 209
Score = 61.7 bits (143), Expect = 7e-10
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 109 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPVQKS 267
+V+DNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 61
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 114 bits (274), Expect = 1e-25
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +3
Query: 261 EEHRXLLSIKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNRE 440
+ R +L++KYP+EHGIVT+W+DMEKIW++ + ++L EEHPVLLTEAPLNP+ NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 441 KSAEIFFETFNVPALFLSMQAVL 509
K +I FETFN PA+++++QAVL
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVL 141
Score = 62.1 bits (144), Expect = 6e-10
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1
Query: 109 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPVQKS 267
+VIDNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 9 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 61
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYE--GFAMPHSIMRVDVAGRDVTK---YLRLLLRK 673
SLYA+GRTTG V+DSGDGV+H VPIYE G++ + R V RD+ + Y+ L +
Sbjct: 142 SLYASGRTTGIVMDSGDGVSHTVPIYEERGYSFTTTAEREIV--RDIKEKLCYVALDFEQ 199
Query: 674 EGVNLRTSAELE 709
E +S+ +E
Sbjct: 200 EMQTAASSSSIE 211
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 100 bits (240), Expect = 1e-21
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
SLYA+GRTTG V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD+T YL +L + G +
Sbjct: 104 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSF 163
Query: 689 RTSAELEI 712
T+AE EI
Sbjct: 164 TTTAEREI 171
Score = 62.1 bits (144), Expect = 6e-10
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1
Query: 109 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAGALEGEIFVGPVQKS 267
+VIDNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + + +VG +S
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Score = 46.0 bits (104), Expect(2) = 9e-09
Identities = 17/27 (62%), Positives = 24/27 (88%)
Frame = +3
Query: 261 EEHRXLLSIKYPMEHGIVTDWNDMEKI 341
+ R +L++KYP+EHGIVT+W+DMEKI
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKI 85
Score = 31.9 bits (69), Expect(2) = 9e-09
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 432 NREKSAEIFFETFNVPALFLSMQAVL 509
N + +I FETFN PA+++++QAVL
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVL 103
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 98.3 bits (234), Expect = 7e-21
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
SLYA+GRTTG V DSGDGV+H VPIYEG+A+PH+I+R+D+AGRD+T YL L+ + G +
Sbjct: 20 SLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSF 79
Query: 689 RTSAELEI 712
T+AE EI
Sbjct: 80 TTTAEREI 87
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3
Query: 453 IFFETFNVPALFLSMQAVL 509
I FE FN PA+++++QAVL
Sbjct: 1 IMFEAFNSPAVYVAIQAVL 19
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 87.8 bits (208), Expect = 1e-17
Identities = 35/68 (51%), Positives = 54/68 (79%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
+LYA+GRTTG V D GDGV+H VP+Y+G+ +PH+ R+D+AGRD+T YL+ L+ + G +
Sbjct: 2186 ALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSF 2245
Query: 689 RTSAELEI 712
+++AE +I
Sbjct: 2246 QSTAEQQI 2253
Score = 69.3 bits (162), Expect = 4e-12
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +3
Query: 336 KIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFETFNVPALFLSMQAVL 509
K+W + + DQL E+ PVLLTEAPLNP+ NRE+ ++ FE+FNVP +++++QAV+
Sbjct: 2130 KMWEHAF--DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVM 2185
Score = 46.0 bits (104), Expect = 4e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 109 VVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKH 207
VVIDNGSG KAG + D+ P+ FP +GRP+H
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRH 2129
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 86.6 bits (205), Expect = 2e-17
Identities = 34/85 (40%), Positives = 56/85 (65%)
Frame = +3
Query: 270 RXLLSIKYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSA 449
R +L + YPM++GIV +W+DM+ +W+Y + + +++ VLLTE PLNP +NREK
Sbjct: 65 RYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMI 124
Query: 450 EIFFETFNVPALFLSMQAVLVCMQQ 524
E+ FE + +++++QAVL Q
Sbjct: 125 EVMFENYQFEGVYIAIQAVLTLYAQ 149
Score = 84.2 bits (199), Expect = 1e-16
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +2
Query: 509 SLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
+LYA G TG V+DSGDGVTH P+YEGFA+PH R+D+AGRD+TKYL L+ G
Sbjct: 145 TLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAF 204
Query: 689 RTSAELE 709
+A+ E
Sbjct: 205 NHTADFE 211
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 100 NQPVVIDNGSGVIKAGFAGDQIPKCRFPNYIGRP 201
N +V DNG+G +K G+AG P FP+ +GRP
Sbjct: 6 NSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 71.7 bits (168), Expect = 7e-13
Identities = 34/72 (47%), Positives = 49/72 (68%)
Frame = +3
Query: 294 PMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLLTEAPLNPRRNREKSAEIFFETFN 473
P++ G++ DW+ EKI +YIYSK+ + + S HP+L++EA N R REK E+ FE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKN-IKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
Query: 474 VPALFLSMQAVL 509
VPA FL +VL
Sbjct: 62 VPAFFLCKNSVL 73
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +2
Query: 515 YATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLRLLLRKEGVNL 688
+A GR+ G V+DSG T AVP+++G+ + +I+R +AG +T R + + V +
Sbjct: 76 FANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEETNVEV 133
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +2
Query: 482 IISFNAGRSSLYATGRT-TGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYLR 658
+++ A +S RT TG V+DSGDGVTH +P+ EG+ + I + +AGRD+T +++
Sbjct: 44 VLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQ 103
Query: 659 LLLRKEGVNLRTSAELE 709
LLR+ + + +E
Sbjct: 104 QLLREREMGIPPEQSME 120
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 476 TGIISFNAGRSSLYATGRTTGAVLDSGDGVTHAVPIYEGFAMPHSIMRVDVAGRDVTKYL 655
+G++ N SLYA+G T G L SG T A IYEG + H++ +++ G +T+ L
Sbjct: 760 SGVMHLNQLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENL 819
Query: 656 RLLLR-KEGVNLRTSAELEI 712
+ LR + G N +S+ +I
Sbjct: 820 KQYLRDQRGHNFTSSSGWQI 839
Score = 45.6 bits (103), Expect = 5e-05
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +1
Query: 100 NQPVVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHTRVMAG 225
N+ +V+DNG G+ K GFAGD++P+ P +G P+ ++ G
Sbjct: 700 NRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +1
Query: 106 PVVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKH 207
P+VID GS + K GFAGD PK FP +GRP+H
Sbjct: 1358 PLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRH 1391
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 35.1 bits (77), Expect = 0.074
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 482 IISFNAGRSSLYATGRT-TGAVLDSGDGVTHAVPI 583
+++ A +S RT TG V+DSGDGVTH +P+
Sbjct: 338 VLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPV 372
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 288 KYPMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEEHPVLL 404
K+P+ H IV DW+ ME+ W K L E+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFK-YLRAEPEDHYFLL 336
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 282 SIKYPMEHGIVTDWNDMEKIWNYIYSKDQLST-FSEEHPVLLTEAPLNPRRNRE 440
+++ P + +VT + E++ ++ +S ++T HPV++TE NP R+
Sbjct: 130 ALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 294 PMEHGIVTDWNDMEKIWNYIYSKDQLSTFSEE 389
P + G + +W+ ++IW+Y + K+ L +E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKEGLEDAMDE 323
>SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 513 KLERPALKEIMPVH*MSQRIFRRTFLYSCEGSEVLLSTALGVLL 382
KL + +PV+ R+FR F C G L ++ GVLL
Sbjct: 220 KLTSKTFLDSLPVYSADGRVFRNKFCVECNGIPNNLLSSYGVLL 263
>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 502 ACIERNNAGTLNVSKNISADFSLFLRGFRGASVNSTGCSSE 380
A R + +L +S++ + + +R FRGA + +TG SS+
Sbjct: 662 ASFGRKASSSLALSEDHKGEVAYVIRNFRGAVIRNTGNSSD 702
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,090,319
Number of Sequences: 59808
Number of extensions: 565104
Number of successful extensions: 1486
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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