BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0431 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa... 44 5e-05 At1g21650.1 68414.m02710 preprotein translocase secA family prot... 42 2e-04 At3g29270.2 68416.m03675 expressed protein 41 6e-04 At3g29270.1 68416.m03674 expressed protein 41 6e-04 At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 41 6e-04 At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 41 6e-04 At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 41 6e-04 At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 41 6e-04 At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) fa... 40 0.001 At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 34 0.049 At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 33 0.15 At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 32 0.20 At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 32 0.20 At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 32 0.26 At2g22690.1 68415.m02689 expressed protein 32 0.26 At1g54970.1 68414.m06278 proline-rich family protein similar to ... 32 0.26 At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 0.35 At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 31 0.35 At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 31 0.35 At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 31 0.35 At5g09670.2 68418.m01119 loricrin-related contains weak similari... 31 0.46 At5g09670.1 68418.m01118 loricrin-related contains weak similari... 31 0.46 At4g37880.1 68417.m05357 expressed protein 31 0.46 At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 0.46 At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 0.61 At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 31 0.61 At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 31 0.61 At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 31 0.61 At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 31 0.61 At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 31 0.61 At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.61 At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 30 0.80 At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 30 1.1 At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil... 30 1.1 At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 29 1.4 At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 29 1.4 At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 29 1.4 At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 29 1.4 At1g67680.1 68414.m07723 expressed protein 29 1.4 At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 29 1.4 At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 29 1.9 At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 29 1.9 At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 29 2.5 At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 29 2.5 At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99... 28 3.2 At5g09630.1 68418.m01114 expressed protein 28 3.2 At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 28 3.2 At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 28 3.2 At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa... 28 3.2 At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase... 28 3.2 At1g67650.1 68414.m07720 expressed protein 28 3.2 At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF020... 28 3.2 At5g64550.1 68418.m08112 loricrin-related contains weak similari... 28 4.3 At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At4g05350.1 68417.m00817 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At3g07660.1 68416.m00918 expressed protein 28 4.3 At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing ... 28 4.3 At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing... 28 4.3 At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing... 28 4.3 At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 28 4.3 At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 28 4.3 At5g44990.1 68418.m05517 hypothetical protein 27 5.7 At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 27 5.7 At3g16720.1 68416.m02135 zinc finger (C3HC4-type RING finger) fa... 27 5.7 At1g72270.1 68414.m08355 expressed protein 27 5.7 At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 27 7.5 At4g22680.1 68417.m03273 myb family transcription factor (MYB85)... 27 7.5 At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger) fa... 27 7.5 At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 27 7.5 At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 27 7.5 At1g64140.1 68414.m07266 expressed protein similar to putative d... 27 7.5 At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 27 9.9 At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 27 9.9 At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 27 9.9 At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 27 9.9 At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99... 27 9.9 At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 27 9.9 At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 27 9.9 >At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 261 Score = 44.4 bits (100), Expect = 5e-05 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR 222 L CP+C F P L CGHT+C++CL+ L R Sbjct: 44 LECPICWESFNVVENVPYVLWCGHTICKYCLLGLQR 79 >At1g21650.1 68414.m02710 preprotein translocase secA family protein contains Pfam profiles: PF01043 SecA protein, amino terminal region, PF00400 WD domain, G-beta repeat, PF00097 zinc finger, C3HC4 type (RING finger) Length = 1579 Score = 42.3 bits (95), Expect = 2e-04 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPFDQTIIQLNPR 267 CPVC + + P L+CGHT C CL +L +K +CP +++ P+ Sbjct: 6 CPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVKFPPQ 59 >At3g29270.2 68416.m03675 expressed protein Length = 263 Score = 40.7 bits (91), Expect = 6e-04 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216 L CP+C F P L CGHT+C++C++ L Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCILGL 85 >At3g29270.1 68416.m03674 expressed protein Length = 263 Score = 40.7 bits (91), Expect = 6e-04 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216 L CP+C F P L CGHT+C++C++ L Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCILGL 85 >At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type Length = 491 Score = 40.7 bits (91), Expect = 6e-04 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +1 Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270 +D C VC + P +P CGHT CR CL + R +CP +T+I + PR+ Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243 >At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type Length = 486 Score = 40.7 bits (91), Expect = 6e-04 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +1 Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270 +D C VC + P +P CGHT CR CL + R +CP +T+I + PR+ Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243 >At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type Length = 486 Score = 40.7 bits (91), Expect = 6e-04 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +1 Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270 +D C VC + P +P CGHT CR CL + R +CP +T+I + PR+ Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243 >At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type Length = 486 Score = 40.7 bits (91), Expect = 6e-04 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +1 Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270 +D C VC + P +P CGHT CR CL + R +CP +T+I + PR+ Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243 >At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 270 Score = 39.9 bits (89), Expect = 0.001 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216 L CP+C F P L CGHTLC++C+ L Sbjct: 43 LECPICWESFNIVENVPYVLWCGHTLCQNCVFGL 76 >At5g13530.1 68418.m01562 protein kinase family protein / ankyrin repeat family protein contains similarity to ankyrin-related gene UNC-44 gi|790608|gb|AAA85854; contains Pfam domains PF00023: Ankyrin repeat and PF00069: Protein kinase domain Length = 834 Score = 34.3 bits (75), Expect = 0.049 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCL 207 C VC + R P+ L CGH C+ CL Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCL 38 >At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis repressor; identical to COP1 regulatory protein/FUSCA protein FUS1 GI:402685 SP:P43254 Length = 675 Score = 32.7 bits (71), Expect = 0.15 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +1 Query: 88 IQAPQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLI-HLHRK-QCP 234 I AP L CP+C + + +CGH+ C C+I HL K CP Sbjct: 41 IGAPDLDKDLLCPICMQII----KDAFLTACGHSFCYMCIITHLRNKSDCP 87 >At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 1277 Score = 32.3 bits (70), Expect = 0.20 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ----CPFDQTIIQ 255 CP+C P +P C H +CR CL+ R CP +TI++ Sbjct: 1040 CPICLESADDPVLTP----CAHRMCRECLLTSWRSPSCGLCPICRTILK 1084 >At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) identical to ARIADNE-like protein ARI7 [Arabidopsis thaliana] GI:29125028; contains similarity to Swiss-Prot:Q94981 ariadne-1 protein (Ari-1) [Drosophila melanogaster]; contains Pfam profile PF01485: IBR domain Length = 562 Score = 32.3 bits (70), Expect = 0.20 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 204 LTC +C + PP S+SCGH C C Sbjct: 135 LTCGICFDSY--PPEKIASVSCGHPFCTTC 162 >At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to transcription factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 1047 Score = 31.9 bits (69), Expect = 0.26 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +1 Query: 133 CREFGAPPRSPISLSCGHTLCRHCLI 210 C E PP P+ CGH C C++ Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECVL 776 >At2g22690.1 68415.m02689 expressed protein Length = 381 Score = 31.9 bits (69), Expect = 0.26 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPFDQTII 252 CPV +E + P+ L+CGH LC+ + + R +CP+ T I Sbjct: 324 CPVS-KEHSSEDNPPMRLACGHVLCKQSINRMSRNGSRSFKCPYCPTDI 371 >At1g54970.1 68414.m06278 proline-rich family protein similar to proline-rich protein GI:170048 from [Glycine max] Length = 335 Score = 31.9 bits (69), Expect = 0.26 Identities = 23/80 (28%), Positives = 33/80 (41%) Frame = +3 Query: 114 PNLSGVLPRVRCSAPESYQPQLRPHPL*ALSDSPSSETMPLRPDDHTVEPEELVVNTALL 293 P LS + + S P + +P L P P+ + SP T P P + Sbjct: 136 PTLSPTVYKPTLSPPVNNKPSLSP-PVYKPTLSPPVYTKPTLPPPVYKKSPSYSPPPPFA 194 Query: 294 QLAGYAPPSQPYQPPCIKAL 353 Y PP++PY P IKA+ Sbjct: 195 PKPTYTPPTKPYVPEIIKAV 214 >At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 4706 Score = 31.5 bits (68), Expect = 0.35 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +1 Query: 178 CGHTLCRHCLIHLHRKQCPF 237 CGH LCRHC + R CPF Sbjct: 4675 CGHVLCRHCSTSVSR--CPF 4692 >At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (BRCA1) contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT) domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473 Length = 1276 Score = 31.5 bits (68), Expect = 0.35 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLI 210 L CP+C + S +SLSC H C C++ Sbjct: 349 LKCPICLSLYN----SAVSLSCNHVFCNACIV 376 >At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to SP|P31244 DNA repair protein RAD16 {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 638 Score = 31.5 bits (68), Expect = 0.35 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +1 Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCL 207 TC VC PP+ P+ CGH C C+ Sbjct: 394 TCSVC----SDPPKDPVVTLCGHVFCYECV 419 >At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 313 Score = 31.5 bits (68), Expect = 0.35 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234 D L CP+CC +P GH C C L R +CP Sbjct: 40 DLLDCPICCHALTSP---IFQCDNGHIACSSCCTKL-RNKCP 77 >At5g09670.2 68418.m01119 loricrin-related contains weak similarity to Loricrin (Swiss-Prot:P23490) [Homo sapiens] Length = 546 Score = 31.1 bits (67), Expect = 0.46 Identities = 15/48 (31%), Positives = 19/48 (39%) Frame = +2 Query: 269 VGCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412 +GC GA A GLC + G ++ C TH GG C Sbjct: 159 MGCVKGARGASGLCISHGGGQRCQKPGCNKGAESKTTFCKTHGGGKRC 206 Score = 27.5 bits (58), Expect = 5.7 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 1/48 (2%) Frame = +2 Query: 275 CEHGAASAGGLCATFAAVSAALY-QGSPGVGQAGVRHCYTHHGGTCCI 415 C A GLC + Y G Q +C H GG CI Sbjct: 262 CTRSAEGQAGLCISHGGGKRCQYFSGCEKGAQGSTNYCKAHGGGKRCI 309 Score = 26.6 bits (56), Expect = 9.9 Identities = 13/47 (27%), Positives = 16/47 (34%) Frame = +2 Query: 272 GCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412 GC GA S C T + G + C +H GG C Sbjct: 185 GCNKGAESKTTFCKTHGGGKRCEHLGCTKSAEGKTDFCISHGGGRRC 231 >At5g09670.1 68418.m01118 loricrin-related contains weak similarity to Loricrin (Swiss-Prot:P23490) [Homo sapiens] Length = 546 Score = 31.1 bits (67), Expect = 0.46 Identities = 15/48 (31%), Positives = 19/48 (39%) Frame = +2 Query: 269 VGCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412 +GC GA A GLC + G ++ C TH GG C Sbjct: 159 MGCVKGARGASGLCISHGGGQRCQKPGCNKGAESKTTFCKTHGGGKRC 206 Score = 27.5 bits (58), Expect = 5.7 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 1/48 (2%) Frame = +2 Query: 275 CEHGAASAGGLCATFAAVSAALY-QGSPGVGQAGVRHCYTHHGGTCCI 415 C A GLC + Y G Q +C H GG CI Sbjct: 262 CTRSAEGQAGLCISHGGGKRCQYFSGCEKGAQGSTNYCKAHGGGKRCI 309 Score = 26.6 bits (56), Expect = 9.9 Identities = 13/47 (27%), Positives = 16/47 (34%) Frame = +2 Query: 272 GCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412 GC GA S C T + G + C +H GG C Sbjct: 185 GCNKGAESKTTFCKTHGGGKRCEHLGCTKSAEGKTDFCISHGGGRRC 231 >At4g37880.1 68417.m05357 expressed protein Length = 388 Score = 31.1 bits (67), Expect = 0.46 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Frame = +1 Query: 100 QWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK------QCPFDQTIIQLN 261 Q+ CPV +E + P+ +SCGH LC+ + + + +CP+ T + ++ Sbjct: 323 QFHSVFVCPVS-KEQSSDDNPPMMMSCGHVLCKQTINKMSKNGSKSSFKCPYCPTDVDIS 381 >At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to transcription factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 981 Score = 31.1 bits (67), Expect = 0.46 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = +1 Query: 124 PVCCREFGAPPRSPISLSCGHTLCRHCL 207 P+CC PP P+ CGH C C+ Sbjct: 677 PICC-VCHDPPEDPVVTLCGHIFCYQCV 703 >At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to transcription factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 862 Score = 30.7 bits (66), Expect = 0.61 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234 CP+C +PP + I C H CR C++ ++ P Sbjct: 616 CPICI----SPPTNIIITRCAHIFCRACILQTLQRSKP 649 >At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 214 Score = 30.7 bits (66), Expect = 0.61 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = +1 Query: 127 VCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCPF-DQTIIQL 258 VCC G + + CGHT CR C + L+R CP ++ II++ Sbjct: 165 VCCVCMGRK-KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEI 210 >At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type Length = 227 Score = 30.7 bits (66), Expect = 0.61 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Frame = +1 Query: 157 RSPISLSCGHTLCRHCLI-----HLHRKQCPFDQTIIQ 255 + PI CGH C CL H H ++CP + ++Q Sbjct: 36 QDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 73 >At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 366 Score = 30.7 bits (66), Expect = 0.61 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 237 D L CP+CC P GH C C ++ K CP+ Sbjct: 52 DLLDCPICCNALTIP---IFQCDKGHIACSSCCTNVSNK-CPY 90 >At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 204 Score = 30.7 bits (66), Expect = 0.61 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +1 Query: 124 PVCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCP 234 P+CC G + + CGHT CR C I ++R CP Sbjct: 154 PLCCVCMGRE-KGAAFIPCGHTYCRVCSREIWMNRGTCP 191 >At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 226 Score = 30.7 bits (66), Expect = 0.61 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%) Frame = +1 Query: 157 RSPISLSCGHTLCRHCL---IHLH--RKQCPFDQTIIQ 255 + PI CGH C CL +HLH K CP + +I+ Sbjct: 31 QDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIE 68 >At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to SP|O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}, RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 481 Score = 30.7 bits (66), Expect = 0.61 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 7/107 (6%) Frame = +3 Query: 78 KNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRP---HPL*ALSDSPSSETMPLRPDD 248 K GA+ G SG+LPR S + P ++ HP A D P +M + Sbjct: 302 KPDQDGANQQGGVAHSGLLPRAVISQQHNQPPPMQQYYMHPPPANQDKPYYPSMDPQRMG 361 Query: 249 HTVEPEEL----VVNTALLQLAGYAPPSQPYQPPCIKALPESDRQAY 377 + +E N + PP Q Y PP +P +Q Y Sbjct: 362 AVISTQEAGGSSTENNGASSSSYMMPPHQSYPPPPYGYMPSPYQQQY 408 >At4g27880.1 68417.m04002 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 327 Score = 30.3 bits (65), Expect = 0.80 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234 + L CPVC P + GHTLC C + +H + CP Sbjct: 60 ELLECPVCTYSMYPPIHQCHN---GHTLCSTCKVRVHNR-CP 97 >At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) Length = 276 Score = 29.9 bits (64), Expect = 1.1 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +1 Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHC---LIHLHRKQCPF-DQTIIQLNPRSW 273 +CPVC ++ + CGHT+ C +I+ ++ +CP ++++ ++P SW Sbjct: 158 SCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQYRCPICAKSMVDMSP-SW 212 >At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family protein contains Pfam profile: PF04981 NMD3 family Length = 516 Score = 29.9 bits (64), Expect = 1.1 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +2 Query: 26 VDRSIKCYFCDECTCYL 76 + +SI+ ++C ECTCYL Sbjct: 50 LQKSIQIFYCPECTCYL 66 >At5g37930.1 68418.m04569 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 349 Score = 29.5 bits (63), Expect = 1.4 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPI-SLSCGHTLCRHCLIHLHRKQCP 234 D L CP+CC P + PI GH C C + R +CP Sbjct: 109 DVLDCPICCE----PLKIPIFQCDNGHLACTLCCTKV-RNRCP 146 >At5g37910.1 68418.m04567 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 276 Score = 29.5 bits (63), Expect = 1.4 Identities = 15/42 (35%), Positives = 17/42 (40%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234 D L CP+CC +P GH C C L K CP Sbjct: 34 DILDCPICCEALTSP---IFQCDNGHLACGSCCPKLSNK-CP 71 >At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) family protein contains a Prosite:PS00518 Zinc finger, C3HC4 type (RING finger), signature and Pfam domain PF01485: IBR domain Length = 532 Score = 29.5 bits (63), Expect = 1.4 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCL 207 C +CC + +SL C H C HC+ Sbjct: 207 CSICCED--RQSEMMLSLKCTHKFCSHCM 233 >At3g61790.1 68416.m06933 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 326 Score = 29.5 bits (63), Expect = 1.4 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234 + L CPVC P + GHTLC C +H + CP Sbjct: 59 ELLECPVCTNSMYPPIHQCHN---GHTLCSTCKARVHNR-CP 96 >At1g67680.1 68414.m07723 expressed protein Length = 664 Score = 29.5 bits (63), Expect = 1.4 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +3 Query: 72 IYKNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRPHP 191 I KN NS D L L L RV ESY+ QL+P P Sbjct: 498 IVKNHNS---TDALVGLVTTLARVNVEKAESYEKQLKPLP 534 >At1g66630.1 68414.m07571 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 303 Score = 29.5 bits (63), Expect = 1.4 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 237 D L CP+C + GAP GH C C + K CP+ Sbjct: 45 DLLDCPICYHKLGAP---IYQCDNGHIACSSCCKKVKYK-CPY 83 >At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 262 Score = 29.1 bits (62), Expect = 1.9 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210 CP+C F P R +CGH C +C++ Sbjct: 74 CPICFGSFTVPCRG----NCGHWYCGNCIL 99 >At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger) Length = 137 Score = 29.1 bits (62), Expect = 1.9 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Frame = +1 Query: 157 RSPISLSCGHTLCRHCL---IHLHRK--QCPFDQTIIQ 255 R PI CGH C CL +H H K CP + +++ Sbjct: 27 REPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVK 64 >At3g59730.1 68416.m06664 receptor lectin kinase, putative similar to receptor lectin kinase 3 [Arabidopsis thaliana] gi|4100060|gb|AAD00733; contains pfam domains PF00139: Legume lectins beta domain and PF00069: Protein kinase domain Length = 523 Score = 28.7 bits (61), Expect = 2.5 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLH 219 L +C EF PPR P+ LS L ++ L H+H Sbjct: 193 LDVTLCPAEFLVPPRKPL-LSLNRDLSQYVLKHMH 226 >At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing protein similar to SP|P34909 General negative regulator of transcription subunit 4 {Saccharomyces cerevisiae}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 989 Score = 28.7 bits (61), Expect = 2.5 Identities = 10/33 (30%), Positives = 15/33 (45%) Frame = +1 Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216 TCP+C E + CG+ +C C H+ Sbjct: 8 TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHI 40 >At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829 Copine I {Homo sapiens} Length = 367 Score = 28.3 bits (60), Expect = 3.2 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHC 204 CP+C P+ ++ SCGHT C+ C Sbjct: 323 CPICLTN----PKD-MAFSCGHTTCKEC 345 >At5g09630.1 68418.m01114 expressed protein Length = 386 Score = 28.3 bits (60), Expect = 3.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 237 CPV R+ + P+ L CGH + + ++ L K C F Sbjct: 328 CPVS-RDQSSEENPPMQLPCGHVISKQSMMRL-SKNCAF 364 >At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING finger) family protein contains Pfam domains PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and PF00097: Zinc finger, C3HC4 type (RING finger) Length = 378 Score = 28.3 bits (60), Expect = 3.2 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = +1 Query: 133 CREFGAPPRSPISLSCGHTLCRHCLIHLHRK 225 CRE P P+ C H C HC + H K Sbjct: 315 CRE---PFLDPVVTKCKHYFCEHCALKHHTK 342 >At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING finger) family protein contains Pfam domains PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and PF00097: Zinc finger, C3HC4 type (RING finger) Length = 378 Score = 28.3 bits (60), Expect = 3.2 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = +1 Query: 133 CREFGAPPRSPISLSCGHTLCRHCLIHLHRK 225 CRE P P+ C H C HC + H K Sbjct: 315 CRE---PFLDPVVTKCKHYFCEHCALKHHTK 342 >At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 235 Score = 28.3 bits (60), Expect = 3.2 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL---IHLHRKQCPFDQTIIQ 255 + C VC EF + +C HT HC+ H H CP ++ I+ Sbjct: 74 MECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSH-SSCPLCRSQIE 122 >At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase (MAPKK), putative (MKK9) mitogen-activated protein kinase kinase (MAPKK) family, PMID:12119167 Length = 310 Score = 28.3 bits (60), Expect = 3.2 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +1 Query: 85 PIQAPQWTDYLTCPVCCREFGAPPRSP 165 P Q P W L C VC FG PPR+P Sbjct: 250 PGQRPDWAT-LMCAVC---FGEPPRAP 272 >At1g67650.1 68414.m07720 expressed protein Length = 651 Score = 28.3 bits (60), Expect = 3.2 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +3 Query: 72 IYKNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRPHP 191 I KN NS D L L L RV E+Y+ QL+P P Sbjct: 485 IVKNHNS---TDALVGLVTTLARVNVEKAEAYEKQLKPLP 521 >At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF02096: 60Kd inner membrane protein; similar to AtOXA1 (GI:6624207) [Arabidopsis thaliana] Length = 525 Score = 28.3 bits (60), Expect = 3.2 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -1 Query: 315 VAHSPPA-EAAPCSQPTPRVQLYDRLVEGALFPMKVNQTVPTE 190 ++HSPP +P PT L+ L G FP+ + +PT+ Sbjct: 32 ISHSPPLFSPSPSPSPTCFSPLHRLLSSGPEFPIGSQEIIPTD 74 >At5g64550.1 68418.m08112 loricrin-related contains weak similarity to Loricrin (Swiss-Prot:P23490) [Homo sapiens] Length = 634 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/47 (27%), Positives = 15/47 (31%) Frame = +2 Query: 275 CEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCCI 415 C A GLC + G Q +C H GG CI Sbjct: 322 CTRSAEGQAGLCISHGGGRRCQSSGCTKGAQGSTNYCKAHGGGKRCI 368 Score = 27.5 bits (58), Expect = 5.7 Identities = 14/48 (29%), Positives = 17/48 (35%) Frame = +2 Query: 269 VGCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412 +GC GA A GLC G ++ C H GG C Sbjct: 219 MGCVKGARGASGLCIGHGGGQRCQKLGCNKGAESKTTFCKAHGGGKRC 266 >At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) Length = 308 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 121 CPVCCREFGAPPRSPIS-LSCGHTLCRHCL 207 CP+C EF R+ ++ L CGHT+ + CL Sbjct: 199 CPICF-EFLFESRNDVTVLPCGHTIHQKCL 227 >At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 265 Score = 27.9 bits (59), Expect = 4.3 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Frame = +1 Query: 172 LSCGHTLCRHCL--IHLHRKQCPFDQTII 252 + CGHT CR C + + R CP T I Sbjct: 230 IPCGHTFCRLCSRELWVQRGNCPLCNTAI 258 >At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 304 Score = 27.9 bits (59), Expect = 4.3 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Frame = +1 Query: 172 LSCGHTLCRHCL--IHLHRKQCPFDQTII 252 + CGHT CR C + + R CP T I Sbjct: 269 IPCGHTFCRLCSRELWVQRGNCPLCNTAI 297 >At4g05350.1 68417.m00817 zinc finger (C3HC4-type RING finger) family protein low similarity to RING-H2 finger protein RHG1a [Arabidopsis thaliana] GI:3822225; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) Length = 206 Score = 27.9 bits (59), Expect = 4.3 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Frame = +1 Query: 121 CPVCCREF--GAPPRSPISLSCGHTLCRHCLIH-LHRKQ-CPFDQTII 252 C +C G PR ++C H CL+ L RK CP +T I Sbjct: 157 CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204 >At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 250 Score = 27.9 bits (59), Expect = 4.3 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Frame = +1 Query: 172 LSCGHTLCRHCL--IHLHRKQCPFDQTII 252 + CGHT CR C + + R CP T I Sbjct: 215 IPCGHTFCRLCSRELWVQRGNCPLCNTTI 243 >At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 480 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL 207 L CP+C F + IS C HT CR C+ Sbjct: 14 LACPICTNPF--KDATTIS-ECLHTFCRSCI 41 >At3g07660.1 68416.m00918 expressed protein Length = 841 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = -2 Query: 494 RYQLPLHRPRKSIXXATHIGVSGAF-QEYSKFLHGAYN 384 +Y LP ++P + TH+G++G + Y F G YN Sbjct: 678 KYTLPHYKPGTNTGNMTHVGITGGYGPTYGSFPAG-YN 714 >At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing protein similar to SP|P34909 General negative regulator of transcription subunit 4 {Saccharomyces cerevisiae}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 236 Score = 27.9 bits (59), Expect = 4.3 Identities = 10/33 (30%), Positives = 15/33 (45%) Frame = +1 Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216 TCP+C E + CG+ +C C H+ Sbjct: 8 TCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHI 40 >At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles PF00097: zinc finger C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino terminal region Length = 282 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSP-ISLSCGHTLCRHCL 207 D +TCP+C P P I+L C H C +C+ Sbjct: 222 DTVTCPIC----QVDPAIPFIALPCQHRYCYYCI 251 >At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles PF00097: zinc finger C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino terminal region Length = 333 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSP-ISLSCGHTLCRHCL 207 D +TCP+C P P I+L C H C +C+ Sbjct: 273 DTVTCPIC----QVDPAIPFIALPCQHRYCYYCI 302 >At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 325 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210 C +C EF RS ++L CGH C++ Sbjct: 277 CTICLEEFD-DGRSIVTLPCGHEFDEECVL 305 >At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related weak similarity to tripartite motif protein TRIM13 [Mus musculus] GI:12407427, gpStaf50 [Homo sapiens] GI:899300; contains Pfam profiles PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 335 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 204 LTC +C PISL+CGH C C Sbjct: 229 LTCSICLDTVF----DPISLTCGHIYCYMC 254 >At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING finger) family protein similar to SP|O15541 Zinc finger protein 183 {Homo sapiens}; contains Pfam profiles PF04396: Protein of unknown function, DUF537, PF00097: Zinc finger, C3HC4 type (RING finger), PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 586 Score = 27.9 bits (59), Expect = 4.3 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = +1 Query: 133 CREFGAPPRSPISLSCGHTLCRHCLIHLHRK 225 CRE P P+ C H C HC + H K Sbjct: 280 CRE---PFVDPVVTKCKHYFCEHCALKHHTK 307 >At5g44990.1 68418.m05517 hypothetical protein Length = 350 Score = 27.5 bits (58), Expect = 5.7 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 339 CIKALPESDRQAYDTVIRTMEELAVFLKC 425 C L ESD + + TVIR E AV KC Sbjct: 225 CGNTLTESDIRLFVTVIRFDEAYAVIFKC 253 >At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles:PF05495 CHY zinc finger, PF00097 zinc finger, C3HC4 type (RING finger) Length = 291 Score = 27.5 bits (58), Expect = 5.7 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-RKQCP 234 CPVC R L CGHT+ C + LH R CP Sbjct: 163 CPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCP 203 >At3g16720.1 68416.m02135 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 304 Score = 27.5 bits (58), Expect = 5.7 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL---IHLHRKQCPFDQTIIQ 255 D + C VC EF + +C HT C+ H H CP +++++ Sbjct: 115 DPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSH-STCPLCRSLVE 165 >At1g72270.1 68414.m08355 expressed protein Length = 2777 Score = 27.5 bits (58), Expect = 5.7 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +3 Query: 42 SVIFVMSVRVIYKNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRPHPL*ALSDSPSS 221 S + V ++ K NS + LPN S V V S Q Q+ P PL L S S Sbjct: 1057 SPLIVCILQKCVKLLNSESQAYSLPNKSAVSLYVYSSLKYILQTQVDPRPLSCLVQSVLS 1116 Query: 222 ETM 230 E + Sbjct: 1117 EVV 1119 >At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 1029 Score = 27.1 bits (57), Expect = 7.5 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210 CP+C +P C H LCR CL+ Sbjct: 794 CPICLEALEDAVLTP----CAHRLCRECLL 819 >At4g22680.1 68417.m03273 myb family transcription factor (MYB85) similar to myb DNA-binding protein GI:1020155 from [Arabidopsis thaliana] Length = 266 Score = 27.1 bits (57), Expect = 7.5 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 156 PESYQPQLRPHPL*ALSDSPSSETMPLRPDDHTVEPEELVVNTALLQLA 302 P ++QP L P S+ +S+T+P PDD +VEP+ NT ++++ Sbjct: 123 PMTHQP-LNQEP----SNIDNSKTIPSNPDDVSVEPK--TTNTKYVEIS 164 >At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 71 Score = 27.1 bits (57), Expect = 7.5 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Frame = +1 Query: 121 CPVCCREF--GAPPRSPISLSCGHTLCRHCLIH-LHRKQ-CPFDQT 246 C +C G PR ++C H CL+ L RK CP +T Sbjct: 22 CSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCPLCRT 67 >At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 772 Score = 27.1 bits (57), Expect = 7.5 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210 CP+C E+ P P SCGH C C++ Sbjct: 245 CPICL-EY---PLCPQITSCGHIFCFPCIL 270 >At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related weak similarity to tripartite motif protein TRIM13 [Mus musculus] GI:12407427; contains Pfam profile PF03105: SPX domain, weak hit to PF00097: Zinc finger, C3HC4 type (RING finger) Length = 335 Score = 27.1 bits (57), Expect = 7.5 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 204 LTC +C +P +L CGH C C Sbjct: 229 LTCAICLETVF----NPYALKCGHIFCNSC 254 >At1g64140.1 68414.m07266 expressed protein similar to putative disease resistance protein GB:CAB40943 GI:4586107 from [Arabidopsis thaliana]; weak similarity to Loricrin (Swiss-Prot:P23490) [Homo sapiens] Length = 646 Score = 27.1 bits (57), Expect = 7.5 Identities = 13/47 (27%), Positives = 16/47 (34%) Frame = +2 Query: 272 GCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412 GC GA A G C + G + +C H GG C Sbjct: 263 GCHKGARGASGRCISHGGGRRCQKHGCHKGAEGRTVYCKAHGGGRRC 309 >At3g58040.1 68416.m06470 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 308 Score = 26.6 bits (56), Expect = 9.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234 + L CPVC P + GHTLC +C + + + CP Sbjct: 56 ELLECPVCTNLMYPPIHQCPN---GHTLCSNCKLRV-QNTCP 93 >At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles: PF00097 zinc finger, C3HC4 type (RING finger), PF01697 Domain of unknown function Length = 913 Score = 26.6 bits (56), Expect = 9.9 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 207 D L+C +C P + +CGH+ C+ CL Sbjct: 720 DELSCAICLEICFEPSTT----TCGHSFCKKCL 748 >At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiquitin ligase, contains two RING finger domain; identical to PRT1 [Arabidopsis thaliana] GI:3319884 Length = 410 Score = 26.6 bits (56), Expect = 9.9 Identities = 7/18 (38%), Positives = 12/18 (66%) Frame = +1 Query: 163 PISLSCGHTLCRHCLIHL 216 P+ L+CGH C C++ + Sbjct: 202 PVVLNCGHVYCEGCVVDM 219 >At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) family protein similar to BRCA1-associated protein 2 [Homo sapiens] GI:3252872; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF02148: Zn-finger in ubiquitin-hydrolases and other protein Length = 461 Score = 26.6 bits (56), Expect = 9.9 Identities = 10/39 (25%), Positives = 15/39 (38%) Frame = +1 Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234 TCPVC ++ C H+ C+ + CP Sbjct: 166 TCPVCLERLDQDTGGILTTMCNHSFHCSCISNWPDSSCP 204 >At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829 Copine I {Homo sapiens} Length = 401 Score = 26.6 bits (56), Expect = 9.9 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = +1 Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHC 204 +CP+C R ++ SCGH C C Sbjct: 356 SCPICLTN-----RKDVAFSCGHMTCGDC 379 >At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein similar to SP|Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiquitin family, PF01805: Surp module Length = 785 Score = 26.6 bits (56), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +3 Query: 297 LAGYAPPSQPYQ-PPCIKALPESDRQAYD 380 + G APP P + PP + PE+ RQ +D Sbjct: 657 MPGMAPPPPPEEAPPPLPEEPEAKRQKFD 685 >At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing protein Length = 775 Score = 26.6 bits (56), Expect = 9.9 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +1 Query: 130 CCREFGAPPRSPISLSCG 183 C EFG P PISLS G Sbjct: 58 CLEEFGGGPDDPISLSIG 75 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,268,132 Number of Sequences: 28952 Number of extensions: 246823 Number of successful extensions: 987 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 919 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 986 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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