Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0431
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa... 44 5e-05
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 42 2e-04
At3g29270.2 68416.m03675 expressed protein 41 6e-04
At3g29270.1 68416.m03674 expressed protein 41 6e-04
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 41 6e-04
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 41 6e-04
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 41 6e-04
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 41 6e-04
At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 34 0.049
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 33 0.15
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 32 0.20
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 32 0.20
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 32 0.26
At2g22690.1 68415.m02689 expressed protein 32 0.26
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 32 0.26
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 0.35
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 31 0.35
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 31 0.35
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 31 0.35
At5g09670.2 68418.m01119 loricrin-related contains weak similari... 31 0.46
At5g09670.1 68418.m01118 loricrin-related contains weak similari... 31 0.46
At4g37880.1 68417.m05357 expressed protein 31 0.46
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 0.46
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 0.61
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 31 0.61
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.61
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 30 0.80
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil... 30 1.1
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 29 1.4
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 29 1.4
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 29 1.4
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 29 1.4
At1g67680.1 68414.m07723 expressed protein 29 1.4
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 29 1.4
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 29 1.9
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 29 1.9
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 29 2.5
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 29 2.5
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99... 28 3.2
At5g09630.1 68418.m01114 expressed protein 28 3.2
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 28 3.2
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 28 3.2
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa... 28 3.2
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase... 28 3.2
At1g67650.1 68414.m07720 expressed protein 28 3.2
At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF020... 28 3.2
At5g64550.1 68418.m08112 loricrin-related contains weak similari... 28 4.3
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At4g05350.1 68417.m00817 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At3g07660.1 68416.m00918 expressed protein 28 4.3
At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing ... 28 4.3
At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing... 28 4.3
At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing... 28 4.3
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 28 4.3
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 28 4.3
At5g44990.1 68418.m05517 hypothetical protein 27 5.7
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 27 5.7
At3g16720.1 68416.m02135 zinc finger (C3HC4-type RING finger) fa... 27 5.7
At1g72270.1 68414.m08355 expressed protein 27 5.7
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 27 7.5
At4g22680.1 68417.m03273 myb family transcription factor (MYB85)... 27 7.5
At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 27 7.5
At1g64140.1 68414.m07266 expressed protein similar to putative d... 27 7.5
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 27 9.9
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 27 9.9
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99... 27 9.9
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 27 9.9
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 27 9.9
>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 261
Score = 44.4 bits (100), Expect = 5e-05
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR 222
L CP+C F P L CGHT+C++CL+ L R
Sbjct: 44 LECPICWESFNVVENVPYVLWCGHTICKYCLLGLQR 79
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPFDQTIIQLNPR 267
CPVC + + P L+CGHT C CL +L +K +CP +++ P+
Sbjct: 6 CPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVKFPPQ 59
>At3g29270.2 68416.m03675 expressed protein
Length = 263
Score = 40.7 bits (91), Expect = 6e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216
L CP+C F P L CGHT+C++C++ L
Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCILGL 85
>At3g29270.1 68416.m03674 expressed protein
Length = 263
Score = 40.7 bits (91), Expect = 6e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216
L CP+C F P L CGHT+C++C++ L
Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCILGL 85
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270
+D C VC + P +P CGHT CR CL + R +CP +T+I + PR+
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270
+D C VC + P +P CGHT CR CL + R +CP +T+I + PR+
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270
+D C VC + P +P CGHT CR CL + R +CP +T+I + PR+
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 106 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQLNPRS 270
+D C VC + P +P CGHT CR CL + R +CP +T+I + PR+
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRT 243
>At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 270
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216
L CP+C F P L CGHTLC++C+ L
Sbjct: 43 LECPICWESFNIVENVPYVLWCGHTLCQNCVFGL 76
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 34.3 bits (75), Expect = 0.049
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCL 207
C VC + R P+ L CGH C+ CL
Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCL 38
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 88 IQAPQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLI-HLHRK-QCP 234
I AP L CP+C + + +CGH+ C C+I HL K CP
Sbjct: 41 IGAPDLDKDLLCPICMQII----KDAFLTACGHSFCYMCIITHLRNKSDCP 87
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ----CPFDQTIIQ 255
CP+C P +P C H +CR CL+ R CP +TI++
Sbjct: 1040 CPICLESADDPVLTP----CAHRMCRECLLTSWRSPSCGLCPICRTILK 1084
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 204
LTC +C + PP S+SCGH C C
Sbjct: 135 LTCGICFDSY--PPEKIASVSCGHPFCTTC 162
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 31.9 bits (69), Expect = 0.26
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 133 CREFGAPPRSPISLSCGHTLCRHCLI 210
C E PP P+ CGH C C++
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECVL 776
>At2g22690.1 68415.m02689 expressed protein
Length = 381
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPFDQTII 252
CPV +E + P+ L+CGH LC+ + + R +CP+ T I
Sbjct: 324 CPVS-KEHSSEDNPPMRLACGHVLCKQSINRMSRNGSRSFKCPYCPTDI 371
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 31.9 bits (69), Expect = 0.26
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = +3
Query: 114 PNLSGVLPRVRCSAPESYQPQLRPHPL*ALSDSPSSETMPLRPDDHTVEPEELVVNTALL 293
P LS + + S P + +P L P P+ + SP T P P +
Sbjct: 136 PTLSPTVYKPTLSPPVNNKPSLSP-PVYKPTLSPPVYTKPTLPPPVYKKSPSYSPPPPFA 194
Query: 294 QLAGYAPPSQPYQPPCIKAL 353
Y PP++PY P IKA+
Sbjct: 195 PKPTYTPPTKPYVPEIIKAV 214
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 178 CGHTLCRHCLIHLHRKQCPF 237
CGH LCRHC + R CPF
Sbjct: 4675 CGHVLCRHCSTSVSR--CPF 4692
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLI 210
L CP+C + S +SLSC H C C++
Sbjct: 349 LKCPICLSLYN----SAVSLSCNHVFCNACIV 376
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCL 207
TC VC PP+ P+ CGH C C+
Sbjct: 394 TCSVC----SDPPKDPVVTLCGHVFCYECV 419
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 31.5 bits (68), Expect = 0.35
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234
D L CP+CC +P GH C C L R +CP
Sbjct: 40 DLLDCPICCHALTSP---IFQCDNGHIACSSCCTKL-RNKCP 77
>At5g09670.2 68418.m01119 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 269 VGCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412
+GC GA A GLC + G ++ C TH GG C
Sbjct: 159 MGCVKGARGASGLCISHGGGQRCQKPGCNKGAESKTTFCKTHGGGKRC 206
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +2
Query: 275 CEHGAASAGGLCATFAAVSAALY-QGSPGVGQAGVRHCYTHHGGTCCI 415
C A GLC + Y G Q +C H GG CI
Sbjct: 262 CTRSAEGQAGLCISHGGGKRCQYFSGCEKGAQGSTNYCKAHGGGKRCI 309
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/47 (27%), Positives = 16/47 (34%)
Frame = +2
Query: 272 GCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412
GC GA S C T + G + C +H GG C
Sbjct: 185 GCNKGAESKTTFCKTHGGGKRCEHLGCTKSAEGKTDFCISHGGGRRC 231
>At5g09670.1 68418.m01118 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 269 VGCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412
+GC GA A GLC + G ++ C TH GG C
Sbjct: 159 MGCVKGARGASGLCISHGGGQRCQKPGCNKGAESKTTFCKTHGGGKRC 206
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +2
Query: 275 CEHGAASAGGLCATFAAVSAALY-QGSPGVGQAGVRHCYTHHGGTCCI 415
C A GLC + Y G Q +C H GG CI
Sbjct: 262 CTRSAEGQAGLCISHGGGKRCQYFSGCEKGAQGSTNYCKAHGGGKRCI 309
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/47 (27%), Positives = 16/47 (34%)
Frame = +2
Query: 272 GCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412
GC GA S C T + G + C +H GG C
Sbjct: 185 GCNKGAESKTTFCKTHGGGKRCEHLGCTKSAEGKTDFCISHGGGRRC 231
>At4g37880.1 68417.m05357 expressed protein
Length = 388
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +1
Query: 100 QWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK------QCPFDQTIIQLN 261
Q+ CPV +E + P+ +SCGH LC+ + + + +CP+ T + ++
Sbjct: 323 QFHSVFVCPVS-KEQSSDDNPPMMMSCGHVLCKQTINKMSKNGSKSSFKCPYCPTDVDIS 381
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 31.1 bits (67), Expect = 0.46
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 124 PVCCREFGAPPRSPISLSCGHTLCRHCL 207
P+CC PP P+ CGH C C+
Sbjct: 677 PICC-VCHDPPEDPVVTLCGHIFCYQCV 703
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234
CP+C +PP + I C H CR C++ ++ P
Sbjct: 616 CPICI----SPPTNIIITRCAHIFCRACILQTLQRSKP 649
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 127 VCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCPF-DQTIIQL 258
VCC G + + CGHT CR C + L+R CP ++ II++
Sbjct: 165 VCCVCMGRK-KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEI 210
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 30.7 bits (66), Expect = 0.61
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +1
Query: 157 RSPISLSCGHTLCRHCLI-----HLHRKQCPFDQTIIQ 255
+ PI CGH C CL H H ++CP + ++Q
Sbjct: 36 QDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 73
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 237
D L CP+CC P GH C C ++ K CP+
Sbjct: 52 DLLDCPICCNALTIP---IFQCDKGHIACSSCCTNVSNK-CPY 90
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 30.7 bits (66), Expect = 0.61
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 124 PVCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCP 234
P+CC G + + CGHT CR C I ++R CP
Sbjct: 154 PLCCVCMGRE-KGAAFIPCGHTYCRVCSREIWMNRGTCP 191
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 30.7 bits (66), Expect = 0.61
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 157 RSPISLSCGHTLCRHCL---IHLH--RKQCPFDQTIIQ 255
+ PI CGH C CL +HLH K CP + +I+
Sbjct: 31 QDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIE 68
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 30.7 bits (66), Expect = 0.61
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Frame = +3
Query: 78 KNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRP---HPL*ALSDSPSSETMPLRPDD 248
K GA+ G SG+LPR S + P ++ HP A D P +M +
Sbjct: 302 KPDQDGANQQGGVAHSGLLPRAVISQQHNQPPPMQQYYMHPPPANQDKPYYPSMDPQRMG 361
Query: 249 HTVEPEEL----VVNTALLQLAGYAPPSQPYQPPCIKALPESDRQAY 377
+ +E N + PP Q Y PP +P +Q Y
Sbjct: 362 AVISTQEAGGSSTENNGASSSSYMMPPHQSYPPPPYGYMPSPYQQQY 408
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234
+ L CPVC P + GHTLC C + +H + CP
Sbjct: 60 ELLECPVCTYSMYPPIHQCHN---GHTLCSTCKVRVHNR-CP 97
>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 276
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +1
Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHC---LIHLHRKQCPF-DQTIIQLNPRSW 273
+CPVC ++ + CGHT+ C +I+ ++ +CP ++++ ++P SW
Sbjct: 158 SCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQYRCPICAKSMVDMSP-SW 212
>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
protein contains Pfam profile: PF04981 NMD3 family
Length = 516
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 26 VDRSIKCYFCDECTCYL 76
+ +SI+ ++C ECTCYL
Sbjct: 50 LQKSIQIFYCPECTCYL 66
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPI-SLSCGHTLCRHCLIHLHRKQCP 234
D L CP+CC P + PI GH C C + R +CP
Sbjct: 109 DVLDCPICCE----PLKIPIFQCDNGHLACTLCCTKV-RNRCP 146
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234
D L CP+CC +P GH C C L K CP
Sbjct: 34 DILDCPICCEALTSP---IFQCDNGHLACGSCCPKLSNK-CP 71
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCL 207
C +CC + +SL C H C HC+
Sbjct: 207 CSICCED--RQSEMMLSLKCTHKFCSHCM 233
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234
+ L CPVC P + GHTLC C +H + CP
Sbjct: 59 ELLECPVCTNSMYPPIHQCHN---GHTLCSTCKARVHNR-CP 96
>At1g67680.1 68414.m07723 expressed protein
Length = 664
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +3
Query: 72 IYKNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRPHP 191
I KN NS D L L L RV ESY+ QL+P P
Sbjct: 498 IVKNHNS---TDALVGLVTTLARVNVEKAESYEKQLKPLP 534
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 237
D L CP+C + GAP GH C C + K CP+
Sbjct: 45 DLLDCPICYHKLGAP---IYQCDNGHIACSSCCKKVKYK-CPY 83
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210
CP+C F P R +CGH C +C++
Sbjct: 74 CPICFGSFTVPCRG----NCGHWYCGNCIL 99
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +1
Query: 157 RSPISLSCGHTLCRHCL---IHLHRK--QCPFDQTIIQ 255
R PI CGH C CL +H H K CP + +++
Sbjct: 27 REPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVK 64
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLH 219
L +C EF PPR P+ LS L ++ L H+H
Sbjct: 193 LDVTLCPAEFLVPPRKPL-LSLNRDLSQYVLKHMH 226
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +1
Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216
TCP+C E + CG+ +C C H+
Sbjct: 8 TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHI 40
>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 367
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHC 204
CP+C P+ ++ SCGHT C+ C
Sbjct: 323 CPICLTN----PKD-MAFSCGHTTCKEC 345
>At5g09630.1 68418.m01114 expressed protein
Length = 386
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 237
CPV R+ + P+ L CGH + + ++ L K C F
Sbjct: 328 CPVS-RDQSSEENPPMQLPCGHVISKQSMMRL-SKNCAF 364
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 133 CREFGAPPRSPISLSCGHTLCRHCLIHLHRK 225
CRE P P+ C H C HC + H K
Sbjct: 315 CRE---PFLDPVVTKCKHYFCEHCALKHHTK 342
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 133 CREFGAPPRSPISLSCGHTLCRHCLIHLHRK 225
CRE P P+ C H C HC + H K
Sbjct: 315 CRE---PFLDPVVTKCKHYFCEHCALKHHTK 342
>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 235
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL---IHLHRKQCPFDQTIIQ 255
+ C VC EF + +C HT HC+ H H CP ++ I+
Sbjct: 74 MECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSH-SSCPLCRSQIE 122
>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK9) mitogen-activated protein
kinase kinase (MAPKK) family, PMID:12119167
Length = 310
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 85 PIQAPQWTDYLTCPVCCREFGAPPRSP 165
P Q P W L C VC FG PPR+P
Sbjct: 250 PGQRPDWAT-LMCAVC---FGEPPRAP 272
>At1g67650.1 68414.m07720 expressed protein
Length = 651
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 72 IYKNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRPHP 191
I KN NS D L L L RV E+Y+ QL+P P
Sbjct: 485 IVKNHNS---TDALVGLVTTLARVNVEKAEAYEKQLKPLP 521
>At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF02096:
60Kd inner membrane protein; similar to AtOXA1
(GI:6624207) [Arabidopsis thaliana]
Length = 525
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 315 VAHSPPA-EAAPCSQPTPRVQLYDRLVEGALFPMKVNQTVPTE 190
++HSPP +P PT L+ L G FP+ + +PT+
Sbjct: 32 ISHSPPLFSPSPSPSPTCFSPLHRLLSSGPEFPIGSQEIIPTD 74
>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 634
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/47 (27%), Positives = 15/47 (31%)
Frame = +2
Query: 275 CEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCCI 415
C A GLC + G Q +C H GG CI
Sbjct: 322 CTRSAEGQAGLCISHGGGRRCQSSGCTKGAQGSTNYCKAHGGGKRCI 368
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +2
Query: 269 VGCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412
+GC GA A GLC G ++ C H GG C
Sbjct: 219 MGCVKGARGASGLCIGHGGGQRCQKLGCNKGAESKTTFCKAHGGGKRC 266
>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPIS-LSCGHTLCRHCL 207
CP+C EF R+ ++ L CGHT+ + CL
Sbjct: 199 CPICF-EFLFESRNDVTVLPCGHTIHQKCL 227
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 172 LSCGHTLCRHCL--IHLHRKQCPFDQTII 252
+ CGHT CR C + + R CP T I
Sbjct: 230 IPCGHTFCRLCSRELWVQRGNCPLCNTAI 258
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 172 LSCGHTLCRHCL--IHLHRKQCPFDQTII 252
+ CGHT CR C + + R CP T I
Sbjct: 269 IPCGHTFCRLCSRELWVQRGNCPLCNTAI 297
>At4g05350.1 68417.m00817 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHG1a [Arabidopsis thaliana] GI:3822225; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 206
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = +1
Query: 121 CPVCCREF--GAPPRSPISLSCGHTLCRHCLIH-LHRKQ-CPFDQTII 252
C +C G PR ++C H CL+ L RK CP +T I
Sbjct: 157 CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 172 LSCGHTLCRHCL--IHLHRKQCPFDQTII 252
+ CGHT CR C + + R CP T I
Sbjct: 215 IPCGHTFCRLCSRELWVQRGNCPLCNTTI 243
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL 207
L CP+C F + IS C HT CR C+
Sbjct: 14 LACPICTNPF--KDATTIS-ECLHTFCRSCI 41
>At3g07660.1 68416.m00918 expressed protein
Length = 841
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 494 RYQLPLHRPRKSIXXATHIGVSGAF-QEYSKFLHGAYN 384
+Y LP ++P + TH+G++G + Y F G YN
Sbjct: 678 KYTLPHYKPGTNTGNMTHVGITGGYGPTYGSFPAG-YN 714
>At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 236
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +1
Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 216
TCP+C E + CG+ +C C H+
Sbjct: 8 TCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHI 40
>At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing
protein / zinc finger (C3HC4-type RING finger) family
protein contains Pfam profiles PF00097: zinc finger
C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
terminal region
Length = 282
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSP-ISLSCGHTLCRHCL 207
D +TCP+C P P I+L C H C +C+
Sbjct: 222 DTVTCPIC----QVDPAIPFIALPCQHRYCYYCI 251
>At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing
protein / zinc finger (C3HC4-type RING finger) family
protein contains Pfam profiles PF00097: zinc finger
C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
terminal region
Length = 333
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSP-ISLSCGHTLCRHCL 207
D +TCP+C P P I+L C H C +C+
Sbjct: 273 DTVTCPIC----QVDPAIPFIALPCQHRYCYYCI 302
>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 325
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210
C +C EF RS ++L CGH C++
Sbjct: 277 CTICLEEFD-DGRSIVTLPCGHEFDEECVL 305
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 204
LTC +C PISL+CGH C C
Sbjct: 229 LTCSICLDTVF----DPISLTCGHIYCYMC 254
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 133 CREFGAPPRSPISLSCGHTLCRHCLIHLHRK 225
CRE P P+ C H C HC + H K
Sbjct: 280 CRE---PFVDPVVTKCKHYFCEHCALKHHTK 307
>At5g44990.1 68418.m05517 hypothetical protein
Length = 350
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 339 CIKALPESDRQAYDTVIRTMEELAVFLKC 425
C L ESD + + TVIR E AV KC
Sbjct: 225 CGNTLTESDIRLFVTVIRFDEAYAVIFKC 253
>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles:PF05495 CHY zinc
finger, PF00097 zinc finger, C3HC4 type (RING finger)
Length = 291
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-RKQCP 234
CPVC R L CGHT+ C + LH R CP
Sbjct: 163 CPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCP 203
>At3g16720.1 68416.m02135 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL---IHLHRKQCPFDQTIIQ 255
D + C VC EF + +C HT C+ H H CP +++++
Sbjct: 115 DPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSH-STCPLCRSLVE 165
>At1g72270.1 68414.m08355 expressed protein
Length = 2777
Score = 27.5 bits (58), Expect = 5.7
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +3
Query: 42 SVIFVMSVRVIYKNANSGASVDGLPNLSGVLPRVRCSAPESYQPQLRPHPL*ALSDSPSS 221
S + V ++ K NS + LPN S V V S Q Q+ P PL L S S
Sbjct: 1057 SPLIVCILQKCVKLLNSESQAYSLPNKSAVSLYVYSSLKYILQTQVDPRPLSCLVQSVLS 1116
Query: 222 ETM 230
E +
Sbjct: 1117 EVV 1119
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210
CP+C +P C H LCR CL+
Sbjct: 794 CPICLEALEDAVLTP----CAHRLCRECLL 819
>At4g22680.1 68417.m03273 myb family transcription factor (MYB85)
similar to myb DNA-binding protein GI:1020155 from
[Arabidopsis thaliana]
Length = 266
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 156 PESYQPQLRPHPL*ALSDSPSSETMPLRPDDHTVEPEELVVNTALLQLA 302
P ++QP L P S+ +S+T+P PDD +VEP+ NT ++++
Sbjct: 123 PMTHQP-LNQEP----SNIDNSKTIPSNPDDVSVEPK--TTNTKYVEIS 164
>At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 71
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +1
Query: 121 CPVCCREF--GAPPRSPISLSCGHTLCRHCLIH-LHRKQ-CPFDQT 246
C +C G PR ++C H CL+ L RK CP +T
Sbjct: 22 CSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCPLCRT 67
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 121 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 210
CP+C E+ P P SCGH C C++
Sbjct: 245 CPICL-EY---PLCPQITSCGHIFCFPCIL 270
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 115 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 204
LTC +C +P +L CGH C C
Sbjct: 229 LTCAICLETVF----NPYALKCGHIFCNSC 254
>At1g64140.1 68414.m07266 expressed protein similar to putative
disease resistance protein GB:CAB40943 GI:4586107 from
[Arabidopsis thaliana]; weak similarity to Loricrin
(Swiss-Prot:P23490) [Homo sapiens]
Length = 646
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/47 (27%), Positives = 16/47 (34%)
Frame = +2
Query: 272 GCEHGAASAGGLCATFAAVSAALYQGSPGVGQAGVRHCYTHHGGTCC 412
GC GA A G C + G + +C H GG C
Sbjct: 263 GCHKGARGASGRCISHGGGRRCQKHGCHKGAEGRTVYCKAHGGGRRC 309
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234
+ L CPVC P + GHTLC +C + + + CP
Sbjct: 56 ELLECPVCTNLMYPPIHQCPN---GHTLCSNCKLRV-QNTCP 93
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 109 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 207
D L+C +C P + +CGH+ C+ CL
Sbjct: 720 DELSCAICLEICFEPSTT----TCGHSFCKKCL 748
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 26.6 bits (56), Expect = 9.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 163 PISLSCGHTLCRHCLIHL 216
P+ L+CGH C C++ +
Sbjct: 202 PVVLNCGHVYCEGCVVDM 219
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/39 (25%), Positives = 15/39 (38%)
Frame = +1
Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 234
TCPVC ++ C H+ C+ + CP
Sbjct: 166 TCPVCLERLDQDTGGILTTMCNHSFHCSCISNWPDSSCP 204
>At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 401
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 118 TCPVCCREFGAPPRSPISLSCGHTLCRHC 204
+CP+C R ++ SCGH C C
Sbjct: 356 SCPICLTN-----RKDVAFSCGHMTCGDC 379
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 297 LAGYAPPSQPYQ-PPCIKALPESDRQAYD 380
+ G APP P + PP + PE+ RQ +D
Sbjct: 657 MPGMAPPPPPEEAPPPLPEEPEAKRQKFD 685
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 130 CCREFGAPPRSPISLSCG 183
C EFG P PISLS G
Sbjct: 58 CLEEFGGGPDDPISLSIG 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,268,132
Number of Sequences: 28952
Number of extensions: 246823
Number of successful extensions: 987
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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