Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0430
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   7.8  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   7.8  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   7.8  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   7.8  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 100 EITSSKNRTDKRVTQSNA**QGSNLCSSYTQHKTGFSGQLFKK 228
           E  +++N+ D    QSN     S   + YT +   FS QLFK+
Sbjct: 399 ETNTTENQKDNARGQSNKGHGFSTSLNPYTLYFKSFSSQLFKE 441


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 769 SLYPEAPVYATHSSPAWITPCTLSSFTTSLQIFIAPNMM 653
           SLYPE P       P WI   ++    +++  F+   MM
Sbjct: 63  SLYPEEPCSLNIVGPLWIDVSSIVFAASAISTFLQMAMM 101


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 213 STESGLMLCV*RA*ITSLSLSIRLC-DSFVGSILRTSNFE 97
           + ES L  CV +  ++S++ S+RLC   F  S++R+S ++
Sbjct: 496 NVESVLNACVEKYTLSSITCSLRLCLLEFPDSLIRSSFYD 535


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 120 ILRTSNFENHPSSVFNSALVDI 55
           +LRT   +N P S F +A  DI
Sbjct: 180 VLRTGPIQNRPDSTFTAATTDI 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,756,141
Number of Sequences: 5004
Number of extensions: 82954
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)