Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0430
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)               40   0.002
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)           28   8.3  
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          28   8.3  

>SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)
          Length = 312

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 510 IYEIRSYSLKPGTMIEWGNNWARGLTYRRAQNEAFAGYFSQIGRLYMFI 656
           IYE+R+Y+LK G   +W + W +GL  R   +     + S+IG L   I
Sbjct: 235 IYELRAYTLKTGKSEQWAHRWLQGLPARCKYSAPVGVWMSEIGTLNQVI 283



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 286 VGSWTVSVGDMDQALHLFKYVGGFEKIDKAKQLFKQD 396
           VG W   +G ++Q +HL++Y    E++   ++ FK++
Sbjct: 269 VGVWMSEIGTLNQVIHLWQYDSADERVRIRQEAFKEE 305


>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 581 PYLPTRAKRGVCGLFLTNWPIIHVHHIWCYKDLQARRETRES 706
           PYL  + K  +C   LT   I+   H++C K LQA  ET E+
Sbjct: 6   PYLREKCKCSLCSEVLTEPKILRCFHVYCQKCLQA--ETNEA 45


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 350  PTYLNKCRA*SISPTDTVHDPTSSQPSSALCEVLDLHAACNFL 222
            P Y++  R  S  PT T H PT        C+ L+L   C  +
Sbjct: 935  PRYVDCDRTTSTPPTPTTHTPTIKPACDLHCQTLNLDGTCTVM 977


>SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)
          Length = 310

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -2

Query: 464 SKYWRCLDLTILPLSLSSNW*LESCLNNCLALSIFSNPPTYLNKCR 327
           SK W  L  TILP +LS++W  +  LNN + L+ F+     LN  R
Sbjct: 181 SKQWALL-ATILPCALSTSW-PKHMLNNGINLACFALFTNRLNAPR 224


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 788 SKIRQCISLS-RGTRVRDTLIPSLDYAMYS 702
           +K+ +  SL  +GTR+ D ++P++D A YS
Sbjct: 74  TKLIKSTSLGGKGTRINDIIVPTMDTARYS 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,012,084
Number of Sequences: 59808
Number of extensions: 624535
Number of successful extensions: 1618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)