Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0430
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    33   0.32 
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10...    30   2.2  
At2g21800.1 68415.m02591 expressed protein                             30   2.2  
At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /...    29   5.2  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    28   6.8  
At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)...    28   6.8  
At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)...    28   6.8  
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    28   9.0  
At3g59830.1 68416.m06676 ankyrin protein kinase, putative simila...    28   9.0  
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    28   9.0  

>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 107 LVRRIEPTKESHSRMLSDKEVIYALHTHNIRPDSVDNYLKNYKQHV--DLILHTKQNLVV 280
           L ++IE  K  +  + +   +IY        PD +D  L++ K+ +  ++I H K NL++
Sbjct: 62  LNKKIEDEKSLYEILAAQLSIIYEFEEGE-EPDELDYPLESLKEKIKEEMIKHKKDNLLL 120

Query: 281 SL*DHGQYQLE 313
            L D G    E
Sbjct: 121 ILDDEGSMTTE 131


>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
            WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 176  ALHTHNIRPDSVDNYLKNYKQHV-DLILHTKQNLVVS 283
            ++H +N+R D V   LK +++H+  L   T  N++VS
Sbjct: 896  SIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVS 932


>At2g21800.1 68415.m02591 expressed protein
          Length = 475

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 603 NEAFAGYFSQIGRLYMFIIFGAIKICKLVVKLERVHGVIQAGDECVAYTGASG*RDALSY 782
           N+   G F      Y+ +++ A   C LV K E +  V +  DE  +YT        LSY
Sbjct: 251 NKVLEGSFGGSKIPYVLLLYEAEDFCNLVAKKELLENVYRVRDEYPSYTMCYLTNKLLSY 310

Query: 783 L 785
           +
Sbjct: 311 V 311


>At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 342

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 669 IKICKLVVKLERVHGVIQAGDECVAYTGASG 761
           I IC L  +++ +   IQ GD+CVA TG  G
Sbjct: 208 INIC-LSHRIQILDSSIQTGDDCVAITGGRG 237


>At5g49110.1 68418.m06079 expressed protein  ; expression supported by
            MPSS
          Length = 1487

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/98 (23%), Positives = 46/98 (46%)
 Frame = +1

Query: 163  GSNLCSSYTQHKTGFSGQLFKKLQAACRSNTSHKAELGCELVGSWTVSVGDMDQALHLFK 342
            G+NL   + Q    ++ Q+ +    +C ++ +  A+   +L  S+T S GD+  A+ + +
Sbjct: 1066 GNNLPDKFKQRHGSWAHQICR----SCETSNTTVAKSVLKLAISFTTSPGDLCIAVEVAQ 1121

Query: 343  YVGGFEKIDKAKQLFKQDSSYQLLESERGKMVRSRHLQ 456
             +     +DK+  L +   SY ++       V S  LQ
Sbjct: 1122 ELQNIMGLDKSDTL-EVSESYMVINQSTSASVTSCILQ 1158


>At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 275 PSSALCEVLDLHAACNFLNSCPLNPVLCCVYEEHKLL 165
           PS AL   LD+    N+L+ C  +P++ C  +   +L
Sbjct: 290 PSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNIL 326


>At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 275 PSSALCEVLDLHAACNFLNSCPLNPVLCCVYEEHKLL 165
           PS AL   LD+    N+L+ C  +P++ C  +   +L
Sbjct: 290 PSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNIL 326


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 388 KQDSSYQLLESERGKMVRSRHLQYLLAFSFWP 483
           K D  +  +E+ R K VR   +QYL+ +  WP
Sbjct: 102 KLDEGFYEIEAIRRKRVRKGKVQYLIKWRGWP 133


>At3g59830.1 68416.m06676 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 477

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 275 PSSALCEVLDLHAACNFLNSCPLNPVLCC 189
           PS AL   LD+    N+L+ C  +P++ C
Sbjct: 288 PSKALRFALDIARGMNYLHECKPDPIIHC 316


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 290 PTSSQPSSALCEVLDLHAACNFLNSCPLNPVLCCVYE 180
           PT S  S+           C+  N+CP     CC+YE
Sbjct: 344 PTKSSGSNPPKPPAPSPVVCDKSNTCPAKSTCCCLYE 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,247
Number of Sequences: 28952
Number of extensions: 424018
Number of successful extensions: 1011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)