Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0429
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 308 NFRQIMSVYSISNNTQKLKSYYIIINRDVS 219
           N  QI+S  S+S++ +KLK   + +  D+S
Sbjct: 343 NSNQIVSDNSLSSSEEKLKQDILNLRTDIS 372


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 146  VEWNDAPSRRQDGSEGAH 93
            +E N+APSR+     G H
Sbjct: 1917 IERNEAPSRQTGSGHGGH 1934


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 275 SNNTQKLKSYYIIIN 231
           +NNT K K YYI ++
Sbjct: 139 NNNTNKYKDYYIWVD 153


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 311 PNFRQIMSVYSISNNTQKLKSYYIIIN 231
           P     +S  +I NN    K YY IIN
Sbjct: 312 PKIISSLSNNTIHNNNYNKKLYYNIIN 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,485
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)