Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0426
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    30   0.41 
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.9  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.8  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   3.8  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   6.6  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    26   6.6  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.8  

>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 205 LRWA*VTTGTSAEIKEVLNPYPYSYNQGAEGSADVSGVALTRTKAK 342
           LR   ++T   A    V+NP P     G+ GSA ++GV L    AK
Sbjct: 72  LRCNNISTFPYATKIHVINPIPLGRGMGSSGSAAIAGVMLANEIAK 117


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +2

Query: 554 KPLPALKYEVKLTIVSNHCSCPSR--GMQVLIRPRRSNAKPPSTETSLIGSPSVGAFRSH 727
           KP P  K  +     + + S P R  G   L      N K PS  T + G P  G     
Sbjct: 687 KPAPTTKSSLTELAYNTNVSLPPRSPGTGSLAAGNLPNEKAPSLMTMVNGGPVPGDIGEA 746

Query: 728 SVPL 739
           S+P+
Sbjct: 747 SIPV 750


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 606 WLDTIVSLTSYFKAGNGFYFVMSVDSGNHEMPGDRDIDRWLTV 478
           W   +V++T Y       +FV++ D GN  + GD  +  W T+
Sbjct: 401 WSQPVVNITDYLSDNGDGHFVLAGD-GNQTI-GDFYVMNWTTI 441


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 422 LSPNSPAGTPQSPTPLPRLLVIVRERAFAFVRVKATPLTSALPSA 288
           + P SPA  P  P+  P +   +   A     VK+ P   +LPSA
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA 193


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 89  LRSFNVQNAXLTFVLLAAILGTALAVGQYYVPRS 190
           LR+F+   A   F+ L   +G  L  G Y  PR+
Sbjct: 78  LRAFHANGASFFFIFLYLHIGRGLYYGSYKYPRT 111


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 8   DAREFQSRKRYYIKLCWNASKLVLASSLRSFNVQNAXLTFVL 133
           +  E +SRKR Y++ C N  + V+    +S   +N  +   L
Sbjct: 325 ELNEIKSRKRLYVQNCQNGIEAVIEKLSQSQQSENPFIAHEL 366


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 88  FAEFQRPKCEXYFCFVSRDPWNRSRSGAILRA 183
           F   QRPK   + C V  +P   SR   IL A
Sbjct: 62  FNRVQRPKRHVFNCLVQNEPGVLSRLSGILAA 93


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 484 KPAIDITVPWHFVVTRINRHHKVKTVAR 567
           +P  D+++P H+  +R++R H+     R
Sbjct: 548 EPIQDLSIPIHYPSSRVSRRHRFHRALR 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,470
Number of Sequences: 5004
Number of extensions: 61259
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)