Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0426
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36871| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_19177| Best HMM Match : Ank (HMM E-Value=0)                         31   1.3  
SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)                    30   2.3  
SB_51796| Best HMM Match : PKD (HMM E-Value=1.7)                       29   4.1  
SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)                 29   4.1  
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)                     28   7.1  

>SB_36871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 614 CPSRGMQVLIRPRRSNAKPPSTETS 688
           CP R +   IR +RSN KP +T+TS
Sbjct: 110 CPGRSIVNRIRTKRSNKKPNATQTS 134


>SB_19177| Best HMM Match : Ank (HMM E-Value=0)
          Length = 893

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = -1

Query: 663 ALLRRGRIRTCIPLEGQEQWLDTIVSLTSYFKAGNGFYFVMSVDSGNHEMPGDRDIDRWL 484
           ALL +G     +P++ + +  +  + + +  K G     ++     N E   + + +R L
Sbjct: 280 ALLEKG-----VPIDAKNKDCEPAIHMAARVKGGEKAADILIRSGANPETKNESNGERAL 334

Query: 483 TVKKRY*N-KMIYLKIPENIQIISEFSGGHTPIANTAA 373
            V  R  N +++ L + EN+++      G TP+   +A
Sbjct: 335 HVAARNGNLEVVELLLQENVEVARRSRNGETPLHQASA 372


>SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)
          Length = 318

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -1

Query: 342 LRLCTC*SNSADVSTSFCSLVVRIRVRVKHLLNLRRG----TGCDSC 214
           L LC C +     +TSF  L+  IR ++ ++L L  G    T C SC
Sbjct: 39  LSLCNCFAAGVFFATSFLDLLPMIREKIYYVLRLLCGFDSRTSCPSC 85


>SB_51796| Best HMM Match : PKD (HMM E-Value=1.7)
          Length = 198

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 399 HTPIANTAAPASCYSTGTCLRLCTC*SNSADVSTSFCSL 283
           H  +A+T+APA   ST   +++    +N A VSTS+C L
Sbjct: 94  HGGLASTSAPALRDSTEADVKVTLMIANLAFVSTSYCLL 132


>SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)
          Length = 303

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +3

Query: 525 YQNQQTSQSKNRCPP*NTRSNSQL----CPTIVLALQEECKFLSDRG 653
           +    TS  K RCP     SN +L    C T     QE+C FL + G
Sbjct: 147 WSGSPTSCQKKRCPALTAPSNGRLFPNFCATSGNVYQEKCHFLCNSG 193


>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
          Length = 998

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 616 ARTMVGHNCEFDLVFQGGQRFL 551
           ART+VGH C+ D+V   G   L
Sbjct: 925 ARTLVGHGCDVDMVDSSGNCLL 946


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,479,467
Number of Sequences: 59808
Number of extensions: 506686
Number of successful extensions: 1268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)