Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0426
         (753 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   1.4  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   4.4  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   7.7  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 98   FNVQNAXLTFVLLAAILGTALAVGQYY 178
            FNV    L F L+ AI+G  L  G+Y+
Sbjct: 1435 FNVLLVCLIFWLIFAIMGVQLFAGKYF 1461


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 437  LRTFRLSPNSPAGTPQSPTPLPRLLVI 357
            L+  ++ PN  A + QSP P+ R  V+
Sbjct: 1562 LKRGKIEPNGVASSSQSPAPVRREFVM 1588


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 241 EIKEVLNPYPYSYNQGAEGSADV 309
           E+KE  +    S NQGAEG+A V
Sbjct: 172 ELKEKRSLQEKSTNQGAEGTARV 194


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,285
Number of Sequences: 2352
Number of extensions: 16000
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77755161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)