Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0426
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75710-5|CAB54207.1|  240|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC024826-15|AAF60790.1|  354|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z75710-5|CAB54207.1|  240|Caenorhabditis elegans Hypothetical
           protein D1081.9 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 617 PSRGMQVLIRPRRSNAKPPSTETSLIGSPSVGAFRSHSVPLRL 745
           PS+ + V  R   +  +PP ++ S  G PSV    SH   L L
Sbjct: 156 PSQNLSVNKRRSNTRTEPPFSKISRTGPPSVMRKASHEFSLNL 198


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 321 FNTYKGEGTFPYYNK 365
           +NTY G G +PYYN+
Sbjct: 285 YNTYAGYGGYPYYNQ 299


>AC024826-15|AAF60790.1|  354|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.13 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 510 LAFRGYQNQQTSQSKNRCPP*NTRSNS-QLCPTIVLALQEECKFLSDRGGATQSRRRPKQ 686
           ++F G    QT + K+        + S QL  T V +LQ   K L    G     RRP+Q
Sbjct: 217 VSFEGEVKNQTKEKKSSLKVVKGPAPSLQLEKTTVKSLQTIWKLLGSSLGLFS--RRPQQ 274

Query: 687 VLSDRPRSVXLG 722
           VLS   +++ LG
Sbjct: 275 VLSASHQAIWLG 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,057,853
Number of Sequences: 27780
Number of extensions: 370557
Number of successful extensions: 1003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)