Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0424
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 75 2e-14
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 32 0.089
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 32 0.12
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 31 0.15
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.15
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 31 0.20
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 30 0.36
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 30 0.36
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 30 0.47
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.62
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.82
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 29 1.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 29 1.1
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.9
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.9
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 28 1.9
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 28 1.9
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 2.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 3.3
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.3
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 3.3
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 3.3
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 27 4.4
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 4.4
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 27 4.4
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 27 4.4
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 27 4.4
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 5.8
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 5.8
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 5.8
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 26 7.7
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 7.7
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 7.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 7.7
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 7.7
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 26 7.7
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 26 7.7
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 7.7
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +1
Query: 262 FDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHSS 441
FDFLV G+LL +L E++ + G+STE L++EY++ P HDDW+S +Q S
Sbjct: 56 FDFLVQGQLLKTTLDEYIVQNGLSTESILDIEYIQSTLPPAYLASFSHDDWISGIQLTSD 115
Query: 442 WILSGSYDNSLHIWSTKGQHK 504
IL+ SYD +W G+ K
Sbjct: 116 TILTSSYDGIARVWDKSGEIK 136
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 98 ALEAQLQVRFITKQEQYAVPDSPYAIQCNVHPADLNTLINAILKETSPS 244
A Q+QVRF T+ E AV D+P + ++ L+ ++N +LK P+
Sbjct: 6 APSGQVQVRFTTRNEDLAVGDTPIFVPTSLKRYGLSQIVNHLLKTEKPT 54
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 32.3 bits (70), Expect = 0.089
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIWSTK 492
H +S++Q S+ + SGSYDNS+ IW +
Sbjct: 535 HTAPISSLQFDSNHLYSGSYDNSVRIWDLR 564
Score = 29.5 bits (63), Expect = 0.62
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIWS 486
H D+VS + S+I +GS D ++ +W+
Sbjct: 373 HSDYVSCLAIQDSFIATGSMDTTVRLWN 400
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 492 RTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
RT ++ GHT+P+ V W G Q S S+D+T +W
Sbjct: 259 RTLLFTLSGHTAPITCVRW----GGQNWIYSSSYDKTIRIW 295
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 439 SWILSGSYDNSLHIWSTK 492
+WI S SYD ++ IW K
Sbjct: 281 NWIYSSSYDKTIRIWDAK 298
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +1
Query: 379 PTPQDCLM---HDDWVSAVQAHSS---WILSGSYDNSLHIWSTK 492
P +DCL H D+V+++ H + LSGS D L +WS K
Sbjct: 337 PVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIK 380
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 492 RTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
+T + GHT PV V++ F G F + SHDQTA LW
Sbjct: 411 KTALVAYKGHTGPVWDVAFGPF-GHY--FATASHDQTAQLW 448
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 31.1 bits (67), Expect = 0.20
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIW 483
H D V + + ++SGSYD+S+ IW
Sbjct: 506 HTDSVRTISGYGDILVSGSYDSSIRIW 532
Score = 29.1 bits (62), Expect = 0.82
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIWS 486
H + V AV+ H + ++SGS D ++ +W+
Sbjct: 390 HKEGVWAVKIHENTLVSGSIDKTVRVWN 417
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIW 483
HD +V+ + + ++SGS D+++ IW
Sbjct: 588 HDAFVTLLNVFQNRLISGSADSTIRIW 614
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 30.3 bits (65), Expect = 0.36
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCM 650
S+ GHT V AV W ++ SGS D T LW +S CM
Sbjct: 184 SLSGHTGNVLAVDWC--PKNEFVLASGSADGTCRLWDIRKVSSSFACM 229
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 486 HKRTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
H R+ + GH P++ +S F D +F+S S D+T LW
Sbjct: 298 HDRSLLRTFQGHARPIRDLS---FSQDGRSFLSTSFDKTIKLW 337
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 29.9 bits (64), Expect = 0.47
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIW--STKGQH 501
H+D + V+ + I+SG YD ++ IW +T QH
Sbjct: 428 HEDLIRTVRFNDEKIVSGGYDGTVRIWNFNTGEQH 462
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 367 RFPAPTPQDCLMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAYQVIHH 528
RFPA QD D V VQ ++SGS D ++ +W + + Y++ H
Sbjct: 210 RFPAD--QDFRATLDSVYCVQYDDEIMVSGSKDRTVSVWDVNSRF-ILYKLYGH 260
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 29.5 bits (63), Expect = 0.62
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 403 HDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQH 501
H D++ +V WI+SGS D ++ WS H
Sbjct: 511 HKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPH 545
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 549 VSFQGDQATFVSGSHDQTAILW 614
+ F D T VSGS D+T LW
Sbjct: 382 LDFSKDGKTLVSGSGDRTVCLW 403
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 29.1 bits (62), Expect = 0.82
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 403 HDDWVS--AVQAHSSWILSGSYDNSLHIWSTK-GQHKLAYQ 516
H D+V AV S W LSGS D S+ W + GQ L Q
Sbjct: 537 HTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQ 577
Score = 27.9 bits (59), Expect = 1.9
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Frame = +1
Query: 421 AVQAHSSWILSGSYDNSLHIWSTKGQHKLAYQVIHHQ*---KQYHGCPSRVIKLHLLVDL 591
A SS +LSGS D ++ +W + + I + Y G V+ + + D
Sbjct: 491 AFSPDSSILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDS 550
Query: 592 MIKQQYS-GYGMYLEILLTV*S-LTV-GHDKGIECLSVSADGNRFASGTG 732
S M L T S LT GH + + S DG +FASG+G
Sbjct: 551 RWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSPDGRQFASGSG 600
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 492 RTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
++T GH +P+ V + F F + SHDQTA LW
Sbjct: 435 KSTIVKYAGHNAPIWDVQFSPFG---YYFATASHDQTARLW 472
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 516 GHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
GH V+ +S+ G AT SGS D+ LW
Sbjct: 189 GHLDWVRTLSFKKTSGSTATLASGSQDRYIRLW 221
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
SI GHT VK V+W + ++S DQT L+
Sbjct: 365 SISGHTKSVKGVAW---DPEGKFYLSAGTDQTTRLF 397
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 328 VSTEDTLEVEYLERFPAPTPQDCLMHDDWV-SAVQAHSSWILSGSYDNSLHIWSTK 492
+S D V+ + D H+D+V +A ++ ++SG YD ++ +W T+
Sbjct: 140 LSGSDDKTVKVWDLSTGAVQYDLSGHEDYVRTASWMSATRLVSGGYDGTIRLWDTR 195
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 516 GHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRN 635
GHTS V +VS D VSGS D+T + +WN+ N
Sbjct: 103 GHTSDVLSVS---ISPDNRQVVSGSRDKT--IKIWNIIGN 137
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 480 MEHKRTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITY 659
M + + ++ GH+ V ++S D +SGS D++ IL WN+ R+ V+ +
Sbjct: 1 MPEQLVLRATLEGHSGWVTSLSTAPENPD--ILLSGSRDKSIIL--WNLVRDDVNYGVAQ 56
Query: 660 R 662
R
Sbjct: 57 R 57
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 477 YMEHKRTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNV 626
YM R + ++ + V AV V F FVSGS+D+T + ++NV
Sbjct: 255 YMYDMRNLKRALHVYKDHVSAVMSVDFSPTGQEFVSGSYDKT--IRIYNV 302
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 436 SSWILSGSYDNSLHIWSTKGQHKLAYQVIHHQ 531
+SW + S+DNS+ +W G++K +++ Q
Sbjct: 354 ASWNIYNSFDNSMVLWCPYGKNKTLICLLNFQ 385
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 661 VGHDKGIECLSVSADGNRFASG 726
+GH + CLSV GN ASG
Sbjct: 376 IGHKGRVRCLSVHVSGNWLASG 397
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 403 HDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAYQVIH 525
H D+V H WILS S D ++ IW+ + ++ +A H
Sbjct: 94 HMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGH 136
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -3
Query: 746 TNIVIPVPLAKRLPSADTDRHSIPLSWPTVSDHTVNRISR 627
TN+ P P++ S + R S+ +WP + +++ + R
Sbjct: 175 TNLTFPEPISDDSDSVEFQRDSLNNNWPASLEGSIHELPR 214
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIWS 486
H D V +Q + + SGSYD ++ +W+
Sbjct: 272 HSDGVMCLQLVRNILASGSYDATIRLWN 299
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +3
Query: 486 HKRTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRG 665
H T + + GH VK V W +G SGS D W PR C+ T G
Sbjct: 194 HMSTEELKLTGHGWDVKTVDWHPSKG---LLASGSKDNLVKFW---DPRTGT-CIATLHG 246
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 439 SWILSGSYDNSLHIWSTKGQHKLAYQVIHHQ 531
SW+ +G+ +L+IWS K + + H+Q
Sbjct: 89 SWLAAGTEKGNLYIWSLKSGALIYFFRAHYQ 119
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSV 641
S H + VKA++W Q G+ D+T + +WN R S+
Sbjct: 411 SFHNHIAAVKAITWSPHQRGILASGGGTADRT--IKLWNTQRGSM 453
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 412 WVSAVQAHSSWILSGSYDNSLHIWSTK 492
W + S+ ++SG+ DN++ +W K
Sbjct: 56 WTCDINKSSTLMVSGAADNTMRLWDVK 82
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 652 SLTVGHDKGIECLSVSADGNRFASGT 729
S+ HD I CL +S G++ AS +
Sbjct: 169 SIVPAHDSEISCLGISKTGSKIASSS 194
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -3
Query: 773 LLLLAGTPRTNIVIPVPLAKRLPSAD----TDRHSIPLSWPTVSDHTVNRISRYIP 618
L L TPRT L +RL +D S+ L PT DH N I +++P
Sbjct: 2 LKLFLSTPRTLPNSRFLLLRRLQPLGLRYRSDASSLHLFTPTWRDHATNTIIKFVP 57
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIW 483
H D V V I+S SYD +L +W
Sbjct: 576 HTDSVREVACLGDLIVSASYDGTLRVW 602
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
++ GH PV ++S F + SGS D+T +W
Sbjct: 462 TLAGHEGPVSSLS---FNSSGSLLASGSWDKTVRIW 494
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 403 HDDWVSAVQA--HSSWILSGSYDNSLHIWSTKGQ-HKLAYQVIHH 528
H D+V + +LSGS D SL +W Q +L Y++ H
Sbjct: 131 HTDYVKCLLLLEEEGLLLSGSTDASLIVWDVSSQPSRLLYKLTGH 175
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = +1
Query: 391 DCLM----HDDWVSAVQAHSS--WILSGSYDNSLHIWSTKG 495
DCL H V V H + ++SGSYDNS+ W G
Sbjct: 414 DCLAVLQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDG 454
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIW 483
H V A+ ++++SGS+D+S+ +W
Sbjct: 659 HHSEVWALAVGPTFVVSGSHDHSIRLW 685
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 267 FLSMWRVTLCLPRRALTRKRGID 335
F+ + T+C P R LT RG+D
Sbjct: 450 FIQVANETMCRPIRKLTESRGLD 472
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 489 KRTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVW 620
KR+ +IP S V+A+ WV+ Q ++ + + W W
Sbjct: 220 KRSAVRTIPVFHS-VEAIGWVNGQPEEKILYTAGEGNLILAWDW 262
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 489 KRTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
KR + + GHT+ VS + F VSGS D+T +W
Sbjct: 127 KRCSVRCLKGHTN---YVSSIDFNPLGTLLVSGSWDETVRIW 165
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 564 DQATFVSGSHDQTAILWVWNVPRNSVDCM 650
D+ V+GS D T LW+ N+P NSV +
Sbjct: 115 DRRIVVTGSWDGTIKLWLGNLP-NSVQTL 142
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Frame = +1
Query: 343 TLEVEYLERFPAPTPQDCL----MHDDWVSAVQ----AHSSWILSGSYDNSLHIWS 486
T + R P C+ +H ++V V SWI S +D SL+IW+
Sbjct: 251 TASYDMTSRIFDPEQHSCIRKVDLHSEFVRDVDWSDFGDGSWIASVGWDESLYIWN 306
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 643 TV*SLTVGHDKGIECLSVSADGNRFASGT 729
T+ SLT GH+ I L++++DG A+G+
Sbjct: 266 TITSLT-GHENRISSLALTSDGTMLATGS 293
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 664 GHDKGIECLSVSADGNRFASGTGIT 738
GH + I C++++ DG R +G+ T
Sbjct: 366 GHQEPILCMAITPDGKRVVTGSDDT 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,759,334
Number of Sequences: 5004
Number of extensions: 83712
Number of successful extensions: 357
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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