Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0424
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily ass... 63 2e-10
Z83122-11|CAB05603.2| 648|Caenorhabditis elegans Hypothetical p... 32 0.59
Z81073-10|CAB03035.2| 648|Caenorhabditis elegans Hypothetical p... 32 0.59
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 32 0.59
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 29 3.1
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 29 3.1
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 29 3.1
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical p... 29 4.1
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 29 4.1
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 29 4.1
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 29 4.1
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 29 4.1
Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical p... 29 5.5
Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 29 5.5
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 29 5.5
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical pr... 29 5.5
X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein. 29 5.5
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 29 5.5
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 5.5
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 29 5.5
AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeri... 29 5.5
AF098999-2|AAC68728.3| 369|Caenorhabditis elegans Hypothetical ... 28 7.2
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ... 28 7.2
>U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily
assigned gene nameprotein 345 protein.
Length = 439
Score = 63.3 bits (147), Expect = 2e-10
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Frame = +1
Query: 262 FDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHSS 441
F+FLV L SLAE ++E V TE L+VE + AP P + DWVS+VQ +
Sbjct: 71 FEFLVGETFLRTSLAEFIEEYEVETETILKVECVIGIEAPKPLHDIQAPDWVSSVQIANG 130
Query: 442 WILSGSYDNSLHIWSTKGQH-KLAYQVIHHQ*K--QYHGCPSRVIKLHLLVDLMIKQQYS 612
I S +Y + I KG+ KLA + K PS+ +L + ++ +
Sbjct: 131 HIFSTTYGGDIVIVDRKGKETKLAVNSANRLLKCISIVKAPSKKNQLD-GTEFVVGGENQ 189
Query: 613 GYGMY-LEILLTV*SLTV-GHDKGIECLSVSADGNRFASGT 729
+Y +E V L + GH++ +EC+SV++D R SG+
Sbjct: 190 LLTLYAIEKGALVEKLILRGHERAVECVSVNSDSTRAISGS 230
>Z83122-11|CAB05603.2| 648|Caenorhabditis elegans Hypothetical
protein F30F8.8 protein.
Length = 648
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 495 TTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSV 641
TT GH PV +V+ F D+ +S + D+T LW RN+V
Sbjct: 385 TTSVRYTGHGGPVFSVN---FSPDRRLLISSAGDRTVRLWSMETQRNAV 430
>Z81073-10|CAB03035.2| 648|Caenorhabditis elegans Hypothetical
protein F30F8.8 protein.
Length = 648
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 495 TTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSV 641
TT GH PV +V+ F D+ +S + D+T LW RN+V
Sbjct: 385 TTSVRYTGHGGPVFSVN---FSPDRRLLISSAGDRTVRLWSMETQRNAV 430
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 31.9 bits (69), Expect = 0.59
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAYQVIH 525
H+ +S++ H + I+SGS+D ++ +W+ +V H
Sbjct: 487 HESAISSIDIHGNHIVSGSWDRTIKMWTIVDSQAETVEVSH 527
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
SIPGH P VS V F D A SGS+D +W
Sbjct: 227 SIPGHEDP---VSSVCFNRDGAYLASGSYDGIVRIW 259
>Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical
protein T01E8.4 protein.
Length = 406
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 498 TQTSI--PGHTSPVKAVSWVSFQGDQATF-VSGSHDQTAILWVWNVPRNSVD 644
TQT I PGH++ V +V + F+ + F +SGS D+T LW RN D
Sbjct: 93 TQTVITAPGHSATVDSV--MLFENNNKQFCLSGSRDRTIRLWSIENARNGED 142
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
++P H+ PV AVS F D + SGS+D +W
Sbjct: 208 TLPAHSDPVSAVS---FNRDGSLIASGSYDGLVRIW 240
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 403 HDDWVSAVQAH--SSWILSGSYDNSLHIWST 489
H D VSAV + S I SGSYD + IW T
Sbjct: 212 HSDPVSAVSFNRDGSLIASGSYDGLVRIWDT 242
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 328 VSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTK 492
VS D ++ E + + H+++V + SS ++SGS+D S+ IW K
Sbjct: 145 VSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVK 201
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 661 VGHDKGIECLSVSADGNRFAS-GTGITMFVLGVPASRRRK 777
V H GI ++ SADG R AS G T+FV PASR ++
Sbjct: 718 VNHTGGILGIAWSADGRRIASVGKDATLFV-HEPASREQR 756
>Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical
protein R134.2 protein.
Length = 1118
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 401 CTMIGCQLFRHTVVGFY-QEVMTIAYIYGAQKDNTN 505
C+ + C T++G Y +++ + Y+YG NTN
Sbjct: 352 CSTVECMTANTTIMGGYARQLFDVVYLYGVALTNTN 387
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 661 VGHDKGIECLSVSADGNRFAS-GTGITMFVLGVPASRRRK 777
V H GI ++ SADG R AS G T+FV PASR ++
Sbjct: 718 VNHTGGILGIAWSADGRRIASVGKDATLFV-HEPASREQR 756
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 661 VGHDKGIECLSVSADGNRFAS-GTGITMFVLGVPASRRRK 777
V H GI ++ SADG R AS G T+FV PASR ++
Sbjct: 718 VNHTGGILGIAWSADGRRIASVGKDATLFV-HEPASREQR 756
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
SIPGH PV + F D SGS DQT +W
Sbjct: 100 SIPGHGEPVISAQ---FSPDGRGLASGSGDQTMRIW 132
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 495 TTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
T + GHT+ V + W G + SGS D+T +W
Sbjct: 228 TVVRCLSGHTASVTCLRW----GGEGLIYSGSQDRTVKMW 263
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 403 HDDWV-SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAYQVIHH 528
H+D V + +Q H +++GS DN+L +W KG+ + Y ++ H
Sbjct: 252 HEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGE--VMYTLVGH 293
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 412 WVSAVQAHSSWILSGSYDNSLHIWST 489
W S + +I+SGS D ++ +WST
Sbjct: 298 WTSQISQCGRYIVSGSTDRTVKVWST 323
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 403 HDDWV-SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAYQVIHH 528
H+D V + +Q H +++GS DN+L +W KG+ + Y ++ H
Sbjct: 254 HEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGE--VMYTLVGH 295
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 412 WVSAVQAHSSWILSGSYDNSLHIWST 489
W S + +I+SGS D ++ +WST
Sbjct: 300 WTSQISQCGRYIVSGSTDRTVKVWST 325
>U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical
protein C26B2.4 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 469 YCHNFLIESNYCVPEQLTPNHRALNSPV-ELVQGTFP 362
YC N ESN C E+ R L+S V EL+Q T P
Sbjct: 130 YCENNYCESNMCREEENRLIDRMLSSTVHELIQKTSP 166
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 516 GHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYR 662
GH ++ ++ +S ++ +FVS S D+T LW + + C TY+
Sbjct: 1106 GHQEKIRKLAAIS---NENSFVSASSDKTVKLWSIKPELDEIGCQWTYQ 1151
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 516 GHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYR 662
GH ++ ++ +S ++ +FVS S D+T LW + + C TY+
Sbjct: 1106 GHQEKIRKLAAIS---NENSFVSASSDKTVKLWSIKPELDEIGCQWTYQ 1151
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 403 HDDWV-SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAYQVIHH 528
H+D V + +Q H +++GS DN+L +W KG+ + Y ++ H
Sbjct: 254 HEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGE--VMYTLVGH 295
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 412 WVSAVQAHSSWILSGSYDNSLHIWST 489
W S + +I+SGS D ++ +WST
Sbjct: 300 WTSQISQCGRYIVSGSTDRTVKVWST 325
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 534 KAVSWVSFQGDQATFVSGSHDQTAILWVWN 623
+ V+WV+F VSGS D+ +W +N
Sbjct: 208 RGVNWVAFHHTNPILVSGSDDRQVKIWRYN 237
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 397 LMHDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAYQVIHH 528
L H D++ H WI+S S D ++ IW+ + ++ +A H+
Sbjct: 92 LGHLDYIRTTFFHHKYPWIISASDDQTVRIWNWQSRNSIAILTGHN 137
>Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +1
Query: 403 HDDWVSAVQAH--SSWILSGSYDNSLHIWS-TKGQHKLA 510
H WV AV + W SG D + IW GQ KL+
Sbjct: 183 HTGWVRAVDVEPGNQWFASGGADRIIKIWDLASGQLKLS 221
>Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +1
Query: 403 HDDWVSAVQAH--SSWILSGSYDNSLHIWS-TKGQHKLA 510
H WV AV + W SG D + IW GQ KL+
Sbjct: 183 HTGWVRAVDVEPGNQWFASGGADRIIKIWDLASGQLKLS 221
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 256 VIFDF-LVCGELLCASLAEH--LQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVS-- 420
++FDF V G + H + + ED + Y + + + H + VS
Sbjct: 548 MVFDFGAVTGSPTMNKIVSHPTMPLTLIGGEDRT-IRYFDNTNGSIIHEAIAHVEGVSSL 606
Query: 421 AVQAHSSWILSGSYDNSLHIWS 486
A+ + ++LSGS+D S+ +W+
Sbjct: 607 AIDPNGLYLLSGSHDGSIRMWN 628
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 256 VIFDF-LVCGELLCASLAEH--LQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVS-- 420
++FDF V G + H + + ED + Y + + + H + VS
Sbjct: 548 MVFDFGAVTGSPTMNKIVSHPTMPLTLIGGEDRT-IRYFDNTNGSIIHEAIAHVEGVSSL 606
Query: 421 AVQAHSSWILSGSYDNSLHIWS 486
A+ + ++LSGS+D S+ +W+
Sbjct: 607 AIDPNGLYLLSGSHDGSIRMWN 628
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 397 LMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQ 498
L D V V H +W+L+ Y+ ++HIW+ + Q
Sbjct: 12 LARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQ 47
>Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical
protein F13D12.7 protein.
Length = 340
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 504 TSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
T+ GHT V ++S D TF+SG+ D +A LW
Sbjct: 178 TAFTGHTGDVMSLS---LSPDFRTFISGACDASAKLW 211
>X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein.
Length = 340
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 504 TSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
T+ GHT V ++S D TF+SG+ D +A LW
Sbjct: 178 TAFTGHTGDVMSLS---LSPDFRTFISGACDASAKLW 211
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 664 GHDKGIECLSVSADGNRFASGTGITMFVLGVPASRRRKPSSYGEKLTRTR 813
GH K + C+ S+DG FA+G + VL + R +G K + T+
Sbjct: 101 GHKKAVNCIEFSSDGLLFATGGKDGVIVLWDILAERGMFRLHGHKESVTQ 150
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 516 GHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
GH V A+ W D+ VSGS D+TA +W
Sbjct: 313 GHCRDVTALEW---SADENMCVSGSSDRTAKIW 342
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIWSTK 492
H + V+ V +WI+SG+ D+++ IW+++
Sbjct: 318 HKNNVTFVTPFKTWIISGAEDSTVKIWNSQ 347
>AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeric G
protein beta subunit1 protein.
Length = 340
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 504 TSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
T+ GHT V ++S D TF+SG+ D +A LW
Sbjct: 178 TAFTGHTGDVMSLS---LSPDFRTFISGACDASAKLW 211
>AF098999-2|AAC68728.3| 369|Caenorhabditis elegans Hypothetical
protein W04C9.5 protein.
Length = 369
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 764 LAGTPRTNIVIPVPLAKRLPSADTDRHSIPLSWPTVSDHTVNRISRYIPYPEY 606
L TPRT V P L LP D D H S + S+++ R+ + P P Y
Sbjct: 47 LPSTPRT--VSPRRLNNLLP--DVDEHFASTSTTSSSENSPRRVKKRYPPPRY 95
>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
protein F07G11.9 protein.
Length = 2025
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 193 CGP*YLNQRNFEGDLTIVREGVIFDFLVCGELLCASLAEHLQEKGVSTED 342
C + + + E + G+ D LV G+ LC A+H +E G +T +
Sbjct: 279 CYKIWTSHKMSEKQFRALNRGIDCDRLVPGKELCVGRAKHKREAGAATSE 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,005,786
Number of Sequences: 27780
Number of extensions: 482764
Number of successful extensions: 1306
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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