Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0424
(844 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 75 6e-14
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 75 6e-14
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 34 0.14
At1g74390.1 68414.m08618 exonuclease family protein contains exo... 32 0.41
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 32 0.55
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 31 0.96
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 31 0.96
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.96
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.96
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 31 1.3
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 31 1.3
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 30 1.7
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 30 1.7
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 30 1.7
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 30 1.7
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 2.2
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 30 2.2
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 30 2.2
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 30 2.2
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 29 2.9
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 29 3.9
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 5.1
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 29 5.1
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 29 5.1
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 29 5.1
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 29 5.1
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 29 5.1
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 5.1
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 29 5.1
At3g62350.1 68416.m07004 hypothetical protein 28 6.8
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 28 8.9
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 28 8.9
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 28 8.9
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 74.9 bits (176), Expect = 6e-14
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 262 FDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHS- 438
FDFL+ GEL+ SL E L KG+S E TLE+EY+ ++ +HDDWVSAV S
Sbjct: 62 FDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSP 121
Query: 439 SWILSGSYDNSLHIWSTKG 495
+IL+G YD +WS+ G
Sbjct: 122 RFILTGCYDGLGRVWSSAG 140
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 403 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTK 492
H W+SA + H SSW +LS SYD + +W +
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLR 389
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 74.9 bits (176), Expect = 6e-14
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 262 FDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHS- 438
FDFL+ GEL+ SL E L KG+S E TLE+EY+ ++ +HDDWVSAV S
Sbjct: 62 FDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSP 121
Query: 439 SWILSGSYDNSLHIWSTKG 495
+IL+G YD +WS+ G
Sbjct: 122 RFILTGCYDGLGRVWSSAG 140
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 403 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTK 492
H W+SA + H SSW +LS SYD + +W +
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLR 389
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 403 HDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKGQHKLAYQVIH 525
H+D+V+ +Q ++ LSGS D + IWS + +H + + +H
Sbjct: 545 HNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLH 588
>At1g74390.1 68414.m08618 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 506
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -3
Query: 761 AGTPRTNIVI--PVPLAKRLPSADTDRHSIPLSWPTVSD--HTVNRISRYIPYP 612
AG P+ NI++ P+ L K L + D H++P T SD TV R + YP
Sbjct: 369 AGRPKLNIIVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKEGFANYP 422
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 388 QDCLMHDDWVSAVQAHS-SWILSGSYDNSLHIWSTKGQHKLAYQVIH 525
+D + DWVS V HS SW+LS ++ K + K +Q+I+
Sbjct: 82 RDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMIN 128
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
S+ GH S V V++ FQ +SG +D+T +W
Sbjct: 243 SVGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIW 278
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
S+ GH S V V++ FQ +SG +D+T +W
Sbjct: 269 SVGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIW 304
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 519 HTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
HTS VKA++W FQ + G D+T W
Sbjct: 313 HTSAVKALAWCPFQANLLATGGGGGDRTIKFW 344
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 519 HTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
HTS VKA++W FQ + G D+T W
Sbjct: 303 HTSAVKALAWCPFQANLLATGGGGGDRTIKFW 334
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 397 LMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQHKLAYQVIHHQ*KQYHGCPSRVIK 570
L H D++ VQ H + WI+S S D ++ IW+ + + ++ H+ Y C S K
Sbjct: 90 LGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHN---HYVMCASFHPK 146
Query: 571 LHLLVDLMIKQ 603
L+V + Q
Sbjct: 147 EDLVVSASLDQ 157
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 388 QDCLMHDDWVSAVQAHS-SWILSGSYDNSLHIWSTKGQHKLAYQVIH 525
+D + DW+S V HS SW++S ++ K + K +Q+I+
Sbjct: 82 RDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMIN 128
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 664 GHDKGIECLSVSADGNRFASGTGIT 738
GH + + C+S S DG + ASG+G T
Sbjct: 107 GHAEAVLCVSFSPDGKQLASGSGDT 131
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 504 TSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
T GH PV VSW D +SGS D T +W
Sbjct: 396 TVFRGHVGPVYQVSW---SADSRLLLSGSKDSTLKIW 429
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +3
Query: 492 RTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
R +QT I GH +AV VSF D SGS D T LW
Sbjct: 100 RCSQT-IAGHA---EAVLCVSFSPDGKQLASGSGDTTVRLW 136
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 540 VSWVSFQGDQATFVSGSHDQTAILWVW 620
V+ VSF D +SGS D+ ILW W
Sbjct: 58 VNTVSFNADGDILLSGSDDRQVILWDW 84
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIW 483
H D +S + H+ I SGS+D +L +W
Sbjct: 173 HADSISCLAVHAGIIYSGSWDKTLKVW 199
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 504 TSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILWVWNV-PRNSVDCMITYRGPRQ 674
+++ GH + VK+VSW + + S D++ +W+W V N DC G Q
Sbjct: 112 STLEGHENEVKSVSW---NASGSCLATCSRDKS--VWIWEVLEGNEYDCAAVLTGHTQ 164
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 421 AVQAHSSWILSGSYDNSLHIWSTK 492
A + +I SGS D S+HIWS K
Sbjct: 548 AFSPNGEYIASGSLDKSIHIWSIK 571
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 540 VSWVSFQGDQATFVSGSHDQTAILWVWNV 626
V+ VSF + +SGS D+ +LW W +
Sbjct: 62 VNTVSFNAEGDVLISGSDDRRVVLWDWQL 90
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 328 VSTEDTLEVEYLERFPAPTPQDCLMHDDWV---SAVQAHSSWILSGSYDNSLHIWSTK 492
VS D V+Y + A D L H D+V + S +++GSYD+++ +W +
Sbjct: 152 VSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDAR 209
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 397 LMHDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAYQVIHHQ*KQYHGCPSRVIK 570
L H D++ VQ H WI+S S D ++ IW+ + + ++ H+ Y C S K
Sbjct: 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHN---HYVMCASFHPK 146
Query: 571 LHLLVDLMIKQ 603
L+V + Q
Sbjct: 147 EDLVVSASLDQ 157
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 501 QTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
+ ++ GHT V+A+S D+ VSGS D + I+W
Sbjct: 892 RATLKGHTGTVRAIS-----SDRGKIVSGSDDLSVIVW 924
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 507 SIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
++ GHT+ A+S V F D S S D+T ILW
Sbjct: 38 TLEGHTA---AISCVKFSNDGNLLASASVDKTMILW 70
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +1
Query: 361 LERFPAPTPQDCLM----HDDWVSAVQAH--SSWILSGSYDNSLHIWSTK 492
L + A +P +CL H ++V V + S+ I+SGS+D ++ IW K
Sbjct: 109 LRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVK 158
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = +1
Query: 391 DCL---MHDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKG 495
DCL H+ +V++VQ + ++ +SGS D + IW+ G
Sbjct: 360 DCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISG 400
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +3
Query: 366 KVPCT-NSTGLFNAR*LGVSCSGTQ*LDSIRKL*Q*LTYMEHKRTTQTS--IPGHTSPVK 536
K+PC T F+ V+C G LDS+ + + + T S + GH V
Sbjct: 104 KLPCAWVMTCAFSPNGQSVACGG---LDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVS 160
Query: 537 AVSWVSFQGDQATFVSGSHDQTAILW 614
+V + A ++ S DQT ILW
Sbjct: 161 CCQYVP--NEDAHLITSSGDQTCILW 184
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +3
Query: 366 KVPCT-NSTGLFNAR*LGVSCSGTQ*LDSIRKL*Q*LTYMEHKRTTQTS--IPGHTSPVK 536
K+PC T F+ V+C G LDS+ + + + T S + GH V
Sbjct: 42 KLPCAWVMTCAFSPNGQSVACGG---LDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVS 98
Query: 537 AVSWVSFQGDQATFVSGSHDQTAILW 614
+V + A ++ S DQT ILW
Sbjct: 99 CCQYVP--NEDAHLITSSGDQTCILW 122
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +3
Query: 366 KVPCT-NSTGLFNAR*LGVSCSGTQ*LDSIRKL*Q*LTYMEHKRTTQTS--IPGHTSPVK 536
K+PC T F+ V+C G LDS+ + + + T S + GH V
Sbjct: 104 KLPCAWVMTCAFSPNGQSVACGG---LDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVS 160
Query: 537 AVSWVSFQGDQATFVSGSHDQTAILW 614
+V + A ++ S DQT ILW
Sbjct: 161 CCQYVP--NEDAHLITSSGDQTCILW 184
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 483 EHKRTTQTSIPGHTSPVKAVSWV--SFQGDQATFVSGSHDQTAILWVWNV 626
+ K T++ + GHTS V ++W+ + + + VSGS D ++VWN+
Sbjct: 53 KRKYTSEKILLGHTSFVGPLAWIPPTDEYPEGRLVSGSMD--TFVFVWNL 100
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 483 EHKRTTQTSIPGHTSPVKAVSWV--SFQGDQATFVSGSHDQTAILWVWNV 626
+ K T++ + GHTS V ++W+ + + + VSGS D ++VWN+
Sbjct: 53 KRKYTSEKILLGHTSFVGPLAWIPPTDEYPEGRLVSGSMD--TFVFVWNL 100
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 534 KAVSWVSFQGDQATFVSGSHDQTAILW 614
+A++ + D + F++GSHD+TA LW
Sbjct: 221 EAITSLCKAADDSHFLTGSHDKTAKLW 247
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +1
Query: 379 PTPQDCLM----HDDWVSAVQAHSS--WILSGSYDNSLHIWSTK 492
P P C + H V+++ SS WI SGS D S+ +W +
Sbjct: 410 PYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVE 453
>At3g62350.1 68416.m07004 hypothetical protein
Length = 228
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 823 SNGAVFWLTFLRSWMVSFFC*LALQGQTLLSQSHLQN 713
+NG++FW T SW F L Q L H QN
Sbjct: 82 ANGSLFWWTTFTSWKYRIFS--ELPSQILACDLHTQN 116
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 403 HDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQHKLAYQVI 522
HD V+AV+ + SS ++S +D SL +W + Q+I
Sbjct: 101 HDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQII 142
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 465 Q*LTYMEHKRTTQTSIPGHTSPVKAVSWVSFQGDQATFVSGSHDQTAILW 614
Q L + H + + HT+ VKA++W Q G+ D+ W
Sbjct: 321 QLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLASGGGTADRCIRFW 370
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 403 HDDWVSAVQAHSSWILSGSYDNSLHIW 483
HDD V++V S + +GS D ++ +W
Sbjct: 176 HDDAVNSVTTAESLVFTGSADGTVKVW 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,817,134
Number of Sequences: 28952
Number of extensions: 445688
Number of successful extensions: 1315
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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