Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0423
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_15589| Best HMM Match : Pentapeptide (HMM E-Value=1.7) 71 8e-13
SB_20477| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_25627| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_18942| Best HMM Match : efhand (HMM E-Value=1.7e-30) 44 1e-04
SB_51782| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 36 0.036
SB_6774| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 36 0.047
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16) 34 0.11
SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 32 0.58
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39) 32 0.58
SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 31 0.76
SB_21204| Best HMM Match : efhand (HMM E-Value=1.7e-21) 31 0.76
SB_18908| Best HMM Match : efhand (HMM E-Value=5.5e-31) 31 1.0
SB_49441| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 31 1.0
SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21) 31 1.3
SB_15365| Best HMM Match : U79_P34 (HMM E-Value=1.8) 31 1.3
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 30 1.8
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68) 30 2.3
SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12) 29 4.1
SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12) 29 5.4
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 28 7.1
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13) 28 7.1
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088) 28 7.1
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9) 28 7.1
SB_55266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 75.4 bits (177), Expect = 5e-14
Identities = 43/130 (33%), Positives = 73/130 (56%)
Frame = +3
Query: 282 WDQLDQLSMRMQHNLEQQIQARNHSGVSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLR 461
W+QL R + +E QI R+ G++E+ +KEF F FDKD++G+L +EFK CL
Sbjct: 485 WEQLLTAIARNINEVENQILTRDSKGITEEQMKEFRASFNFFDKDQTGKLEPNEFKQCLV 544
Query: 462 ALGYDLPMVEEGQPDPSLNLYSVS*IRTATAKYPFKSTWAFMISKETENVHSSEEIENAF 641
+LGY++ ++G + L V T K F++ FM ++ET + ++E++ +F
Sbjct: 545 SLGYNIKEGDKGDREFERLLGIVD--PNGTGKVTFQAFVDFM-TRETADSDTAEQVMESF 601
Query: 642 RAITAHQDRP 671
R + D+P
Sbjct: 602 RILAG--DKP 609
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 29 NDKLRKEFAKHANTFHXWLTE----TRTSMMEGTGSLEQQLATLR 151
N++LR EFA AN W+ + RT GSLE+ L L+
Sbjct: 396 NERLRVEFANKANVVGPWIQQQGEKLRTIGFHMEGSLEKNLQVLQ 440
>SB_15589| Best HMM Match : Pentapeptide (HMM E-Value=1.7)
Length = 502
Score = 71.3 bits (167), Expect = 8e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +3
Query: 279 QWDQLDQLSMRMQHNLEQQIQARNHSGVSEDALKEFSMMF 398
QWDQLDQL+MRM+HNLEQQIQAR +GVSE+ LKEF++MF
Sbjct: 60 QWDQLDQLAMRMKHNLEQQIQARKTTGVSEETLKEFTIMF 99
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/25 (76%), Positives = 24/25 (96%)
Frame = +3
Query: 579 AFMISKETENVHSSEEIENAFRAIT 653
AFMIS+ETENV SS+E+ENAF+A+T
Sbjct: 111 AFMISRETENVGSSQEVENAFKALT 135
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 104 MMEGTGSLEQQLATLRQRASXXXXXXXXXXXXXXXXXXXXXXXILDNRYT 253
M+EG G LE QLA + ++ + ILDNRYT
Sbjct: 1 MVEGQGDLEDQLAEIMRKDTEIADCKADLEVIEGLGAQMEEALILDNRYT 50
>SB_20477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 68.1 bits (159), Expect = 7e-12
Identities = 27/36 (75%), Positives = 33/36 (91%)
Frame = +3
Query: 402 HFDKDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDP 509
HFDKD++G L+H EFKSCLR+LGYDLP+VEEG+ DP
Sbjct: 2 HFDKDKTGYLDHQEFKSCLRSLGYDLPVVEEGETDP 37
>SB_25627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 68.1 bits (159), Expect = 7e-12
Identities = 27/36 (75%), Positives = 33/36 (91%)
Frame = +3
Query: 402 HFDKDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDP 509
HFDKD++G L+H EFKSCLR+LGYDLP+VEEG+ DP
Sbjct: 2 HFDKDKTGYLDHQEFKSCLRSLGYDLPVVEEGETDP 37
>SB_18942| Best HMM Match : efhand (HMM E-Value=1.7e-30)
Length = 233
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Frame = +3
Query: 240 TTATRAQHRGTSAQW--DQLDQLSMRMQHNLEQ-QIQARNHSGVSEDALKEFSMMFKHFD 410
T + A GT+ + + L + MR Q Q ++ AR + ++ +++ ++F FD
Sbjct: 41 TLSPAASRAGTARERLAEALHEAEMRKQRRFMQGKVGARAYQHLTPQEIRDLKLVFDTFD 100
Query: 411 KDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDPSLNLYSVS*IRTATAKYPFKSTWAFMI 590
D+SG ++ E + +R LG+ + +EG +L + + + F F+I
Sbjct: 101 TDKSGSIDGRELRKAMRTLGFKIS--KEGIAGMIADLDA-----DQSGRIEFDEFLDFII 153
Query: 591 SKETENVHSSEEIENAFRAITAHQ 662
SK+++ +EI F+ Q
Sbjct: 154 SKQSDGRDVHDEIVQGFKMFDTDQ 177
>SB_51782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 372 ALKEFSMMFKHFDKDRSGRLNHHEFKSCLRALGYDL 479
AL ++ F +D DRSG + HE + L A GY L
Sbjct: 12 ALNQWKTTFMQYDSDRSGTMEPHELNNALNAFGYRL 47
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 360 VSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLRALGYDL 479
+ E+ +E F FD D+ +++HE K +RALG+D+
Sbjct: 23 LGEEQRQEIKEAFNLFDTDKDQAIDYHELKVAMRALGFDV 62
>SB_6774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 360 VSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLRALGYDL 479
+ E+ +E F FD D+ +++HE K +RALG+D+
Sbjct: 23 LGEEQRQEIKEAFNLFDTDKDQAIDYHELKVAMRALGFDV 62
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 35.5 bits (78), Expect = 0.047
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 288 QLDQLSMRMQHNLE-QQIQARNHSGVSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLRA 464
+LD + H+ E QQ + + +G + +F+ D+D SG ++H+E + L+
Sbjct: 37 ELDNDDQSVFHSCEDQQGEGLSFNGFCKFVTLRLEKIFQEIDEDNSGYIDHNEISNALKK 96
Query: 465 LGYDLP 482
L +LP
Sbjct: 97 LDINLP 102
>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 35.5 bits (78), Expect = 0.047
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +3
Query: 360 VSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDPSLNLYSVS*I 539
++E+ + EF F FDKD G + E + +R+LG + E + +N V
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN---PTEAELQDMIN--EVDAD 59
Query: 540 RTATAKYPFKSTWAFMISKETENVHSSEEIENAFR 644
T +P T M++++ ++ S EEI AFR
Sbjct: 60 GNGTIDFPEFLT---MMARKMKDTDSEEEIREAFR 91
>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
Length = 285
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 360 VSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLRALG 470
+S+ + E+ F FD DR+G + HE S +RALG
Sbjct: 4 LSKAQIAEYKEAFNMFDNDRNGTICSHELGSVMRALG 40
>SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 701
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +2
Query: 494 GTTRSEFESILSIVDPNRDGQVSLQEYMGLHDQQGDR------ERALLRGDRERVPXHHR 655
G + E+E L+ V N DG V E+M D DR +R+ + G E +P
Sbjct: 304 GMSDEEYEDFLTRVPINNDGMVKYVEFMSKFDTTFDRDNNSLFDRSSVLGAPEPMPPIRE 363
Query: 656 APGPAPTSPRKN 691
P P SPRK+
Sbjct: 364 KESP-PGSPRKH 374
>SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 360 VSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLRALG 470
++E+ ++EF F FDK+ GR++ E +R++G
Sbjct: 9 ITEEQIREFKNAFMSFDKNGDGRIDAEELGIVMRSIG 45
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 31.9 bits (69), Expect = 0.58
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +3
Query: 384 FSMMFKHFDKDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDPSLNLYSVS*IRTATAKYP 563
F F FDKD G + E + +R+LG + E + +N V T +P
Sbjct: 2 FKEAFSLFDKDGDGTITTKELGTVMRSLGQN---PTEAELQDMIN--EVDADGNGTIDFP 56
Query: 564 FKSTWAFMISKETENVHSSEEIENAFR 644
T M++++ +N S EEI AFR
Sbjct: 57 EFLT---MMARKMKNTDSEEEIREAFR 80
>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 250
Score = 31.9 bits (69), Expect = 0.58
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +3
Query: 384 FSMMFKHFDKDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDPSLNLYSVS*IRTATAKYP 563
F F FDKD G + E + +R+LG + E + +N V T +P
Sbjct: 2 FKEAFSLFDKDGDGTITTKELGTVMRSLGQN---PTEAELQDMIN--EVDADGNGTIDFP 56
Query: 564 FKSTWAFMISKETENVHSSEEIENAFR 644
T M++++ +N S EEI AFR
Sbjct: 57 EFLT---MMARKMKNTDSEEEIREAFR 80
>SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 842
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 315 QHNLEQQIQARNHSGVSEDALKEF------SMMFKHFDKDRSGRLNHHEFKSCLRALGYD 476
QH QI H ++ KEF +F+ FD+D+SG ++ +E + L+ G+
Sbjct: 684 QHQRRVQISREQHDTLNSK-FKEFFDNLSGRKIFQVFDEDKSGEMDTYELRGALKEAGFT 742
Query: 477 L 479
L
Sbjct: 743 L 743
>SB_21204| Best HMM Match : efhand (HMM E-Value=1.7e-21)
Length = 202
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 378 KEFSMMFKHFDKDRSGRLNHHEFKSCLRALGYDLPMVE 491
+++ F+HFDKD SG + E +R+LG + +E
Sbjct: 50 RKYRDAFEHFDKDSSGSITTRELGGIMRSLGENPTEIE 87
>SB_18908| Best HMM Match : efhand (HMM E-Value=5.5e-31)
Length = 156
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 393 MFKHFDKDRSGRLNHHEFKSCLRALG 470
MFK +DKD SG ++ EFK + G
Sbjct: 99 MFKKYDKDASGSIDREEFKQLMHETG 124
>SB_49441| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 96
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 370 SSLTPEWFLACICCSRLCCMRIESWSSWSHCALVPRCC 257
S+ +P L C C R C RI +S C RCC
Sbjct: 56 SNPSPTSVLVCRSCGRTCASRIGLFSHGKKCQRSSRCC 93
>SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)
Length = 457
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 252 RAQHRGTSAQWDQLDQLSMRMQHNLEQQIQAR 347
R H G AQ Q Q ++R QH LE Q++ R
Sbjct: 254 RVLHDGNEAQLTQRAQRTLRAQHTLEAQLRVR 285
>SB_15365| Best HMM Match : U79_P34 (HMM E-Value=1.8)
Length = 992
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 HVLLKGYLAVAVRIYDTEYRFKLGS-GCPSSTM--GRSYPRARRHDLNSWWLRRPD 419
H +LK + +R ++++YR G P ST G + P +R HD+ W +PD
Sbjct: 815 HDMLKEWARGNIRWFESDYRCLCEDCGKPYSTCDCGSAAPSSRLHDIKGWIWCQPD 870
>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
Length = 1832
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +3
Query: 252 RAQHRGTSAQWDQLDQLS-MRMQHNLE-QQIQARNHSGVSEDALKEFSMMFKHFDKDRSG 425
+A RG +Q Q+D L+ M +Q E QQ Q H S +E ++ +HF K +
Sbjct: 605 QATQRGELSQ-QQIDYLNRMHIQLVGEYQQAQMLEHYQASAALSEEMKLVQEHFQKQSAS 663
Query: 426 RLNHHEF-KSCLRALGYDLPMVEEGQPDPSLNL 521
H F Y L ++ G P P++N+
Sbjct: 664 SFTPHAFVGEAFDHEQYKL-LLSGGAPSPTMNM 695
>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
Length = 720
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 309 RMQHNLEQQIQARNHSGVSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLR 461
R+ H L H G S + + +F +++K++ G LN++EF+S +R
Sbjct: 380 RILHGLAAMEPITPHGGPSGELRCRY--IFYYYNKEKPGLLNYNEFRSLVR 428
>SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 500 TRSEFESILSIVDPNRDGQVSLQEYMGL-HDQQGDR 604
TR ES + +D N+DG+VS +EY+ + +D + ++
Sbjct: 113 TRKSSESRMEQMDKNKDGKVSWEEYVNVEYDPKNEK 148
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 536 DPNRDGQVSLQEYMGLH-----DQQGDRERALLRGDRERVPXHHRAPGPAPTSPRKN 691
DP D + + E G D+ G+R R R + P +HR P P+P P +N
Sbjct: 662 DPREDRRPGMSEGRGRDRPERPDRTGERGREP-RYSTPQGPDYHRRPSPSPPGPPRN 717
>SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 663
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 509 EFESILSIVDPNR---DGQVSLQEYMGLHDQQGDRERALLRGDRER 637
+F+ + I+D + + S+ + LHD+ R+R L R DR+R
Sbjct: 524 DFKEVFDILDKEHSCGEPEYSMVAFFELHDEMNRRKRELHRRDRDR 569
>SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12)
Length = 146
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 393 MFKHFDKDRSGRLNHHEFKSCL 458
+F+ FD DRSGR++ EF S L
Sbjct: 67 VFRTFDDDRSGRIDFKEFMSSL 88
>SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)
Length = 387
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 515 ESILSIVDPNRDGQVSLQEYMGLHDQQGDRERALLRGDRER 637
E L +D N+DG VSL++ + ++ D E ++ +RE+
Sbjct: 210 EETLDDIDKNKDGYVSLEDDLYPESEKEDEEPDWVKTEREQ 250
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 237 WTTATRAQHRGTSAQWDQLDQLSMRMQHN---LEQQIQARNHSG 359
W T T HR T QW +Q +QHN L++ +AR SG
Sbjct: 235 WVTITFRFHRKTWRQWRARNQTVRLLQHNRRGLDEAPRARLLSG 278
>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
Length = 661
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 294 DQLSMRM-QHNLEQQIQARNHSGVSEDALKEFSMMFKHFDKDRSGRLNHHEFKSCLRALG 470
DQ RM +HN Q R G+ D+L +FS + ++ RL+ E LR
Sbjct: 483 DQRHQRMMRHN-----QYRELLGL-RDSL-DFSSNMEDSHATQNLRLSTCELTKSLRNFS 535
Query: 471 YDLPMVEEGQPDPSLNLYSVS*IRTATAKY 560
+LP +++G + +NL+ I T Y
Sbjct: 536 KELPFIKKGHAETQINLFFYKQIMTMEFSY 565
>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
Length = 329
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 601 VSLLIMKAHVLLKGYLAVAVRIYDTEYRFKLGSGCPSSTMG 479
+S +I K H K + ++ T+ +FKL +G TMG
Sbjct: 144 LSSVIQKTHETKKSDWLIQAQVEGTKIKFKLDTGAQDRTMG 184
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 343 ACICCSRLCCMRIESWSSWSHCAL 272
A +C R C SWS+W+ C++
Sbjct: 889 AMVCYQRACPSTWSSWSNWTSCSV 912
>SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)
Length = 398
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 593 QGDRERALLRGDRERVPXHHRAPGPAPTSP--RKNCYANLTKG 715
Q ++E+ +L G +RVP H +PG T+P R+ N T G
Sbjct: 336 QTNKEQMILIGYEKRVPAHLYSPGHQLTTPQVRRLLIGNCTGG 378
>SB_55266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 362 KRRRPEGVLDDVQALRQGSIWTPQPPRVQVVSASPR 469
KRRR +G++D++ R+ + +P P V +PR
Sbjct: 270 KRRRLKGIIDELYVRRRDKLPSPTTPVTADVITTPR 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,542,092
Number of Sequences: 59808
Number of extensions: 513191
Number of successful extensions: 1722
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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