Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0423
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.58 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 387 SMMFKHFDKDRSGRLNHHEFK 449
           S+MF H+D++ +G L   E +
Sbjct: 239 SIMFSHYDRNNNGNLEREELE 259



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -2

Query: 493 SSTMGRSYPRARRHDLNSWWLRRPDRSLSKCLNIIENSFRASSLTPEWFLACICCSRLCC 314
           S T+  S  R+  H+ +  +L    RS+  C +      +   L+P   +A   C R C 
Sbjct: 54  SMTIPPSIDRSSIHEES--YLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCP 111

Query: 313 MR 308
            R
Sbjct: 112 RR 113


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 384 FSMMFKHFDKDRSGRLNHHEFKSCLRALGYDL 479
           + ++   F KD S R+ HH F     A  Y+L
Sbjct: 333 YGLLIYDFFKDSSFRIQHHFFYPDPLASKYEL 364


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 279  QWDQLDQLSMRMQHNLEQQIQARNHSGV 362
            Q  Q  Q   + Q   +QQ QAR   GV
Sbjct: 1215 QQQQQQQQQQQQQQQQQQQHQAREREGV 1242


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 14  QRQEENDKLRKEFAKHAN 67
           Q QE ++KLR  F+K+ N
Sbjct: 179 QAQEVHEKLRNWFSKNVN 196


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 442 SSSRVCEPSGTTCPWL 489
           +S+ + E +GT+C WL
Sbjct: 19  ASTILSESAGTSCKWL 34


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 650 HRAPGPAPTSPRKNCYANLTKGDGRTTA 733
           H +P P  +SP+ +  +  T    RTT+
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSPAARTTS 86


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 176  GRVLRTLVGAASPTVVPGNPCPP 108
            G V R  VG+A    V G+P PP
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPP 1860


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 252 RAQHRGTSAQWDQLDQLSMRMQHNLEQQIQARNHSGVSED 371
           + QH   + Q  Q  Q   + Q   +QQ Q + H  + E+
Sbjct: 430 QTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEE 469


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 362 YTGMVPGLYLLLEVVLHAHRELVQLVPLCASPTVLC 255
           YT  V G  L  ++ L  H+E     PL ++   LC
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALC 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,131
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)