Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0421
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   4.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   5.6  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   7.5  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   7.5  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   7.5  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 636 VLLISDSKNAKKEETCDDSDPEEEIVKTGLIKNCYEKL 749
           +L++ +      E    D   +EE ++ GL+KN Y  L
Sbjct: 536 ILIVGNKTKVNHENDESDQALQEEKIEEGLLKNYYSSL 573


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 661  FFESDISSTHKIIIAPSYVCTTNHIQYIACSLSI 560
            F   D+SST+   +   +    NHI Y  C LS+
Sbjct: 1426 FSLEDLSSTYVANLEDLFPSEKNHISYSPCQLSL 1459


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -2

Query: 476 FFLHITIVFFLNDNFFVFTRVCMFVIYRGFRWYLMVKVNIYWSRLSWHSISSETL 312
           F+ H+    FL+  FF FT   +F+IYR  R+Y++ +  +  S L  +  SS T+
Sbjct: 139 FYAHV----FLSWLFFGFT---IFIIYRELRYYVIFRHAMQSSGLYNNLPSSSTM 186


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 476  FFLHITIVFFLNDNFFVFTRVC 411
            F  + T  FFL D+F  F RVC
Sbjct: 2525 FIKYTTSSFFLTDDFVRFIRVC 2546


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 226 NVLWYTHSQTNNQSILIYHIR 164
           +VLWY  S+ ++ S ++YH++
Sbjct: 152 SVLWYLQSELSDVSSVLYHLQ 172


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 693 RYHHKFLLS*HFLNPI-*VVPIK*SLPHLTFVQPTTFNTLP 574
           R HHK  LS   LNP   V  ++ SLP    + P  F   P
Sbjct: 291 RVHHKLRLSISLLNPDGHVSELRNSLPLSLVISPVMFGARP 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,658
Number of Sequences: 5004
Number of extensions: 63855
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)