Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0421
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 32   0.65 
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.65 
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)                  29   3.5  

>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 223  HLRQHYLFVCIRKFKIQQWPL*KQSYRNLSRVSELMLCQD 342
            HL  H L  C+RK   +Q P   +++RN +       C+D
Sbjct: 1072 HLSDHKLVYCVRKLNWKQAPAQTKTFRNHANYDSRKFCED 1111


>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 223 HLRQHYLFVCIRKFKIQQWPL*KQSYRNLSRVSELMLCQD 342
           HL  H L  C+RK   ++ P   +++RN ++      C+D
Sbjct: 507 HLSDHELVYCVRKLNWKRAPAQTRTFRNYAKYDSRKFCED 546


>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
          Length = 453

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 300 SEFIKGFRTDAVPRQPRPVNVDFDHQVPPEAPV 398
           S+F K  +TD  P Q  P + D+DH+   E+PV
Sbjct: 347 SDF-KRMQTDCPPSQHGPQSFDYDHKTVGESPV 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,751,028
Number of Sequences: 59808
Number of extensions: 444124
Number of successful extensions: 1100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)