Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0421
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF016448-8|AAW30665.1|  536|Caenorhabditis elegans Smek (dictyos...    29   4.0  
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    29   4.0  
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    28   9.3  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    28   9.3  

>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 654 SKNAKKEETCDDSDPEEEIVKTGLIK 731
           SK  K+EE   +SD EE++VK G++K
Sbjct: 782 SKLEKEEEEKSESDGEEKVVKEGILK 807


>AF016448-8|AAW30665.1|  536|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform c protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 648 SDSKNAKKEETCDDSDPEEEIVKTGLIKNCYEKLPIKAE 764
           +D ++ K+ E  D+ +PEEEIV+    K   E + +K E
Sbjct: 26  NDKESLKRMEVDDEKEPEEEIVEKTEEKQEEEDVTVKLE 64


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform a protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 648 SDSKNAKKEETCDDSDPEEEIVKTGLIKNCYEKLPIKAE 764
           +D ++ K+ E  D+ +PEEEIV+    K   E + +K E
Sbjct: 26  NDKESLKRMEVDDEKEPEEEIVEKTEEKQEEEDVTVKLE 64


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein
            K08E7.9 protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 628  FYGYYLYRIQKMLRKKKLVMIATQKKKL*RLVSLKTVMKSYP*RPKDE 771
            F G  ++ + + + K   + +A +KKKL   V  K V  +YP RP+ E
Sbjct: 1046 FAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIE 1093


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
            protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 628  FYGYYLYRIQKMLRKKKLVMIATQKKKL*RLVSLKTVMKSYP*RPKDE 771
            F G  ++ + + + K   + +A +KKKL   V  K V  +YP RP+ E
Sbjct: 1046 FAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIE 1093


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,265
Number of Sequences: 27780
Number of extensions: 354774
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)