BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0421 (825 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 30 2.3 AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek (dictyos... 29 4.0 AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 29 4.0 Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 28 9.3 X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 28 9.3 >U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical protein C16A3.7 protein. Length = 1119 Score = 29.9 bits (64), Expect = 2.3 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3 Query: 654 SKNAKKEETCDDSDPEEEIVKTGLIK 731 SK K+EE +SD EE++VK G++K Sbjct: 782 SKLEKEEEEKSESDGEEKVVKEGILK 807 >AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek (dictyostelium suppressorof mek null) homolog protein 1, isoform c protein. Length = 536 Score = 29.1 bits (62), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 648 SDSKNAKKEETCDDSDPEEEIVKTGLIKNCYEKLPIKAE 764 +D ++ K+ E D+ +PEEEIV+ K E + +K E Sbjct: 26 NDKESLKRMEVDDEKEPEEEIVEKTEEKQEEEDVTVKLE 64 >AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyostelium suppressorof mek null) homolog protein 1, isoform a protein. Length = 1085 Score = 29.1 bits (62), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 648 SDSKNAKKEETCDDSDPEEEIVKTGLIKNCYEKLPIKAE 764 +D ++ K+ E D+ +PEEEIV+ K E + +K E Sbjct: 26 NDKESLKRMEVDDEKEPEEEIVEKTEEKQEEEDVTVKLE 64 >Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein K08E7.9 protein. Length = 1321 Score = 27.9 bits (59), Expect = 9.3 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +1 Query: 628 FYGYYLYRIQKMLRKKKLVMIATQKKKL*RLVSLKTVMKSYP*RPKDE 771 F G ++ + + + K + +A +KKKL V K V +YP RP+ E Sbjct: 1046 FAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIE 1093 >X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A protein. Length = 1321 Score = 27.9 bits (59), Expect = 9.3 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +1 Query: 628 FYGYYLYRIQKMLRKKKLVMIATQKKKL*RLVSLKTVMKSYP*RPKDE 771 F G ++ + + + K + +A +KKKL V K V +YP RP+ E Sbjct: 1046 FAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIE 1093 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,458,265 Number of Sequences: 27780 Number of extensions: 354774 Number of successful extensions: 810 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 796 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 810 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 2040452812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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