Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0421
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.64 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 285 LKTKLSEFIKGFRTDAVPRQPRPVNVDFDHQVPP 386
           +K  L + I GFR DAVP      N+  D   PP
Sbjct: 216 MKFWLDKGIDGFRIDAVPHLFESANISLDE--PP 247


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 580 CIECGWLYKRKMGQ*LFYGY 639
           C+E  ++ KR++G  LF+ Y
Sbjct: 233 CLEVVFVLKRRLGYYLFHTY 252


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 424 NTKKLSLRKKTIVI*RKN--PSLNHFSNRKSEEIFKE 528
           N  K+ LR + +    K     +N F N  SE +FKE
Sbjct: 184 NPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKE 220


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 766 DEPFRITYPKNYWGKNHG 819
           DE F  TYP N   KN+G
Sbjct: 117 DEGFDGTYPTNVVVKNNG 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,260
Number of Sequences: 438
Number of extensions: 4552
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)