Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0419
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    29   0.19 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   2.3  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   3.1  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   4.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   5.4  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    24   7.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.1  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   9.4  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = -1

Query: 297 EPIDIHNVN--APPTLNTSS--KVSSIVTTAAPPFKPKRITASRQ 175
           EP+ + N +  +PP +++ S  K SSI+  + PPF+ + IT S +
Sbjct: 600 EPVSLENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTE 644


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 375  YRYFLFXFIA*MGGRAHSPPGVKWLLEPIDIHNVNAPPTLNTSSKVSSIVTTA 217
            Y+YFL   I   GG  H  P      E  +IH V+ PP  +     SS + ++
Sbjct: 1274 YKYFLEGMI---GGVLHDAPIT---CEKFEIHYVDPPPNYSCGEYFSSFLNSS 1320


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 279 NVNAPPTLNTSSKVSSIVTTAAPPFKP 199
           N+N  PTLNTSS  S+   + +P  +P
Sbjct: 214 NLNHKPTLNTSSTHSNSEESRSPLHEP 240


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 303 LLEPIDIHNVNAPPTLNTSSKVSSIVTTA---APPFKPKR 193
           L  P  I++ ++PP+ +TSS VSS    A     P KP R
Sbjct: 137 LSTPKQIYSKHSPPSTSTSSIVSSSYGDAPSYLAPSKPNR 176


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 339 GGRAHSPPGVKWLLEPIDIHN 277
           GG  H P  V WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 227 TILETLELVFKVGGAFTLWMSMGSS 301
           T ++T+E+V    G FT  ++ GSS
Sbjct: 125 TPVDTVEVVIPTAGTFTTTLTSGSS 149


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 330 AHSPPGVKWLLEPIDIHNVNAPPTL 256
           A  PP +K    P+DI N++A   L
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKL 248


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 273 NAPPTLNTSSKVSSIVTTAAPPFKPKRIT 187
           NAPP+ N S   S++   +    +P+R T
Sbjct: 137 NAPPSANVSKASSNLSLASLAKTQPERAT 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,861
Number of Sequences: 5004
Number of extensions: 21902
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)