Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0419
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   1.7  
01_06_0355 + 28657833-28660665,28660762-28661126                       28   2.9  
09_06_0062 - 20614443-20615037,20615720-20615842,20617967-20618229     27   3.8  
09_06_0297 - 22112619-22112912,22113469-22113630,22113734-22113739     26   8.9  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 237 SSIVTTAAPPFKPKRITA 184
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 337 WTSSQPT--WC*VVTGAHRHPQRKCATHL 257
           WT++ P   W  V  G HRHP R  A  L
Sbjct: 56  WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84


>09_06_0062 - 20614443-20615037,20615720-20615842,20617967-20618229
          Length = 326

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -1

Query: 327 HSPPGVKWLLEPIDIHNVNAPPTLN-TSS----KVSSIVTTAAPPFKP 199
           H  P VKWLLE  D+      P LN T+S    + SSI  T A P  P
Sbjct: 242 HQDPLVKWLLEE-DLLPTGDEPWLNFTASNDVDEFSSIAATGATPALP 288


>09_06_0297 - 22112619-22112912,22113469-22113630,22113734-22113739
          Length = 153

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -1

Query: 318 PGVKWLLEPIDIHNVNAPPTLNTSSKVSSIVTTAAPPFKPKRITASRQ 175
           PG     E  D     APPT   S  + SI +TAAPP   +    SR+
Sbjct: 101 PGAMVRGEGADKEEEEAPPTEKKSRLLPSI-STAAPPSSSRIFLPSRR 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,051
Number of Sequences: 37544
Number of extensions: 162052
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)