Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0419
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   2.3  
SB_54898| Best HMM Match : Peptidase_M19 (HMM E-Value=8.4e-12)         28   3.0  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      27   6.9  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 251 QVLRSPV*LQRLPHPSNRNALLLHG 177
           Q LR    +QR P P+ RN++ LHG
Sbjct: 22  QALRQQNQVQRRPEPTPRNSIFLHG 46


>SB_54898| Best HMM Match : Peptidase_M19 (HMM E-Value=8.4e-12)
          Length = 226

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = +2

Query: 200 GLKGGAAVVTILETLELVFKVGGAF 274
           G++GG A+ + L+TL +++++GG +
Sbjct: 96  GIEGGHAIDSSLDTLRMMYEMGGRY 120


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 14  LIMSLFGVRFVCSFYLVLGXLNCXIIKYGRLDLXLLXQXFK*LDYXKKIXXYYXCREAVM 193
           L  +L  + ++C   LV+G L C ++  G L   LL   +  L +   +  Y  C   VM
Sbjct: 164 LCFTLLVMGYLCCTLLVMGYLCCSLLVMGYLCCTLLVMDY--LCFTLLVMCYLCCTLLVM 221

Query: 194 RF 199
            +
Sbjct: 222 DY 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,500,331
Number of Sequences: 59808
Number of extensions: 176317
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)