Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0419
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    30   0.49 
Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    28   2.0  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical p...    26   7.9  
Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    26   7.9  

>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 324 SPPGVKWLLEPIDIHNVNAPPTLNTSSKVSSIVTTAAPP 208
           +P   K  + P  +    APPT+ T+   +++ TT APP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 324 SPPGVKWLLEPIDIHNVNAPPTLNTSSKVSSIVTTAAP 211
           +PP ++  + P  +    APPT+ T+   S++ TT  P
Sbjct: 21  APPTMRTTMAPTTMKTTVAPPTMKTTRSPSTMKTTKEP 58


>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 273 NAPPTLNTSSKVSSIVTTAAPPFKPKRITA 184
           N P T ++SSK +   TT   P  P+RIT+
Sbjct: 168 NTPRTTSSSSKTTINTTTTRIPSTPRRITS 197


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 273 NAPPTLNTSSKVSSIVTTAAPPFKPKRITA 184
           N P T ++SSK +   TT   P  P+RIT+
Sbjct: 168 NTPRTTSSSSKTTINTTTTRIPSTPRRITS 197


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 188 VMRFGLKGGAAVVTILETLELVFKVGGAFTLWMSMGSSNHLTPGGL 325
           + R    GGA+ VT   T+  +  +      W ++GS+   T GG+
Sbjct: 734 IARAARDGGASGVTATNTVSSLMHMKADGNAWPAIGSTKRTTYGGM 779


>Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 197 FGLKGGAAVVTILETLELVFKVGGA---FTLWMSMGSSNH 307
           F L+    V T L T  + + + GA   F LW S+G +NH
Sbjct: 305 FALEHFGDVATFLTTCIVEYSLIGAAIMFILWKSIGQNNH 344


>AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 197 FGLKGGAAVVTILETLELVFKVGGA---FTLWMSMGSSNH 307
           F L+    V T L T  + + + GA   F LW S+G +NH
Sbjct: 305 FALEHFGDVATFLTTCIVEYSLIGAAIMFILWKSIGQNNH 344


>Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical
           protein F46B6.6a protein.
          Length = 702

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 300 LEPIDIHNVNAPPTLNTSSKVSSIVTTAAPPFKPK 196
           LE +D  NV+A  + +    VS + TTAA  FKP+
Sbjct: 91  LESLDRRNVDAIISDSPLDDVSILQTTAAFSFKPR 125


>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 303 LLEPIDIHNVNAPPTLNTSSKVSSIVTTAAPPFKPKR 193
           L + I + N+  P  +  S+ +  +    APPF+P+R
Sbjct: 394 LPDHIPMENIEQPKKIQVSNILPYMSKPVAPPFEPER 430


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 303 LLEPIDIHNVNAPPTLNTSSKVSSIVTTAAPPFKPKR 193
           L + I + N+  P  +  S+ +  +    APPF+P+R
Sbjct: 394 LPDHIPMENIEQPKKIQVSNILPYMSKPVAPPFEPER 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,726,661
Number of Sequences: 27780
Number of extensions: 128309
Number of successful extensions: 324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)