Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0419
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25990.2 68417.m03742 expressed protein                             27   4.3  
At4g25990.1 68417.m03741 expressed protein                             27   4.3  
At2g35670.1 68415.m04375 transcription factor, putative / fertil...    27   4.3  
At1g48510.1 68414.m05422 cytochrome c oxidase assembly protein s...    26   9.9  

>At4g25990.2 68417.m03742 expressed protein
          Length = 409

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 288 DIHNVNAPPTLNTSSKVSSIVTTAAPPF 205
           ++  + +PP+ NT S  S+I  T +PPF
Sbjct: 9   ELEMMKSPPSNNTPSPSSTISETNSPPF 36


>At4g25990.1 68417.m03741 expressed protein
          Length = 394

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 288 DIHNVNAPPTLNTSSKVSSIVTTAAPPF 205
           ++  + +PP+ NT S  S+I  T +PPF
Sbjct: 9   ELEMMKSPPSNNTPSPSSTISETNSPPF 36


>At2g35670.1 68415.m04375 transcription factor, putative /
           fertilization-independent seed 2 protein (FIS2)
           identical to GB:AF096095
          Length = 632

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 279 NVNAPPTLNTSSKVSSIVTT 220
           NV++PP  ++S K+S I+TT
Sbjct: 127 NVSSPPRAHSSEKISDILTT 146


>At1g48510.1 68414.m05422 cytochrome c oxidase assembly protein
           surfeit-related contains similarity to Swiss-Prot:Q9QXU2
           surfeit locus protein 1 [Rattus norvegicus]
          Length = 384

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 273 NAPPTLNTSSKVSSIVTTAAPPFKPKRITA 184
           N P    TS+  S ++++A PP K KR +A
Sbjct: 26  NLPAASQTSNLESQLLSSAPPPAKKKRGSA 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,292,491
Number of Sequences: 28952
Number of extensions: 125182
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)