Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0418
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 37 0.004
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 31 0.15
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 31 0.27
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 30 0.47
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.82
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 29 1.1
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.9
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 3.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 3.3
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.4
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 4.4
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 26 5.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 5.8
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 517 ELIKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKN 660
EL K + + GL++NER++N+P + P++ L E++ A +N
Sbjct: 168 ELQKLLEPNSGSQVGLIVNERLINMPVQVIPPMYNMLLEEMQWAINEN 215
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 54 FVYFAKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGN 173
F +F+K+PN K ++ D+ + DS + +D D+ N
Sbjct: 26 FGFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSN 65
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/60 (26%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Frame = +3
Query: 69 KMPNKK----NKEIDTNSERTKEQD-SGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
++P KK +++ +++SE ++E++ + SE+DS+ + E E +++ E + E+SD
Sbjct: 68 EVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESD 127
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 96 IDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHG 242
+ +++ +E++ E + +FD +G E+E + D +G D D G
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEG 218
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 224
++ +E D E +E++ + D D + DG+ GE + + E E
Sbjct: 184 DEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEE 232
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 0.82
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +3
Query: 93 EIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQL*GNCF* 272
E+D + K++D + ++++ ++D N E++ + D E ED G ++ +
Sbjct: 84 EVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRR 143
Query: 273 NQMLTLE 293
NQ L +E
Sbjct: 144 NQFLDIE 150
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 243 YRGSHYLLGYVLRNQPVALFHRHSCRLNQNQNLFRCL 133
+ S L Y+LR+ P + F+R+S + N N FR L
Sbjct: 9 FTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFRLL 45
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQDSGSEKDSD 155
+ NKE N+E KEQ+ E D D
Sbjct: 163 HSNNKEAHPNTEENKEQEDNEEDDED 188
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 90 KEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPED 227
K + +ERTKE E +DFD G+ +++ A+ E +D
Sbjct: 50 KSGEAGAERTKENPFREEPGADFDRSGS---DQQYSAEAEANQEDD 92
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 93 EIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQAD 203
+I T++++ K ++ G E SD D DGNY+ K L+++
Sbjct: 22 DIATDNQKDKHENVG-ENVSDED-DGNYIASKLLESN 56
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 598 AISVPLFASLQTELEKAHRKNMAIQL*IPYLDQ*NLHYWRVSEVLLP 738
A+ +P+ L K + ++ + I + D HY RVSEVL P
Sbjct: 75 ALVLPIIQELTWSRRKEPNRYVSFEDFIEHFDNMGPHYPRVSEVLSP 121
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 226 IVTSTVLSSYEATVSEIKC*PWRASPNYYITKLHRQCCEAM 348
++T T+LS E VSE+ +R + ++ CC+ +
Sbjct: 258 LITPTILSMLELNVSEVTASVYRLLRHLFLDATAFSCCQML 298
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 45 TSSFVYFAKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGN 173
T S V M KK+K ++ K +S S+ DSD DSD +
Sbjct: 49 TVSTVDNEHMNKKKSKVCCIFHKQRKFDESSSDSDSDSDSDSS 91
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 410 VTTVVNITKRKNEPSVAQIRELLTKLSQENADPEPKN 520
V+T + + +N + ELL +L+ E+ DP+ N
Sbjct: 147 VSTFLELMNHENADITITVLELLIELTDEDVDPDALN 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,767
Number of Sequences: 5004
Number of extensions: 56527
Number of successful extensions: 236
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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