Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0418
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 39 0.004
06_01_0082 + 656362-657798 32 0.49
05_02_0135 - 6965294-6965875 32 0.49
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 30 2.6
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 29 3.5
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 4.6
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 29 4.6
01_01_0231 + 1951047-1951499 29 4.6
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 29 4.6
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 28 8.1
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224... 28 8.1
08_01_0618 - 5394841-5395036,5395179-5395244,5395727-5395769,539... 28 8.1
04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713 28 8.1
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +3
Query: 84 KNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQL 254
K E ++ ER D DSD DSD +QADF +P+ DFHG+K L
Sbjct: 63 KRAEPSSDEERYSSDDESYSSDSD-DSDDASEELDTVQADFAFYDPKPGDFHGVKLL 118
>06_01_0082 + 656362-657798
Length = 478
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 90 KEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFH 239
K NS R E D D D D +G E++ D E + EDSDF+
Sbjct: 223 KRATNNSSRLDEDDDDDNDDDDDDDEGE---EQQQNNDSEMMDVEDSDFY 269
>05_02_0135 - 6965294-6965875
Length = 193
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 87 NKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
+ + D +S+ + DS S+ DSDFD + + + D +G + +D D
Sbjct: 110 DSDSDHDSDSDHDHDSDSDHDSDFDRGSDSDHDSDSNHDIDGDDNDDDD 158
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 90 KEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
K++D + + + DS + DSD DSD ++ + + D + DSD
Sbjct: 93 KKLDNDDDDGSDWDSVDDSDSDHDSDSDHDHDSDSDHDSDFDRGSDSD 140
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 DTNSERTKEQDSGSEKDSDFDSDG-NYVGEKELQADFEGRNPEDSD 233
+ N E + D G E D D D DG + GE E + D E E+ +
Sbjct: 111 EANGEGGSDDDDGGEDDDDEDEDGDDDEGEGEGEDDDEDEEEEEEE 156
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 69 KMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEG 212
K NKK K TN ++ K + +D+D D D + +L+A G
Sbjct: 120 KKKNKKKKSKKTNLKQKKAAEPKPPRDTDDDEDDEEEADDDLEALLAG 167
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 69 KMPNKKNKEIDTNSE-RTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPED 227
K ++ + E D+ S+ + ++ S DS+ DSDG+Y G+K + G+N D
Sbjct: 306 KKSSRHDSESDSESDHKNARREKSSRHDSESDSDGDY-GKKTTK---HGKNDRD 355
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 66 AKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
A K N + D + + E SGS+ DS+ G+ G + A + DSD
Sbjct: 393 AARDEKVNNDSDGKAGSSSESGSGSDSDSESSDSGSDSGSQSRSAASGSGSSSDSD 448
>01_01_0231 + 1951047-1951499
Length = 150
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 435 KEKMNPVWHRSENCLQNYLRRMQIP-NQRIN*IYSG 539
KE N WHR E ++RR ++P N +++ + +G
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAG 123
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 435 KEKMNPVWHRSENCLQNYLRRMQIP-NQRIN*IYSG 539
KE N WHR E ++RR ++P N +++ + +G
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAG 123
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
++ E +S+ + D E +SD DSDG+ E + +D +G + +DSD
Sbjct: 92 REKDEKGEDSDEDESDDDRGEDESDEDSDGD---ESDEHSD-DGESDDDSD 138
>10_01_0209 +
2236530-2237301,2239196-2239297,2239535-2239716,
2240210-2240420,2240526-2240766,2240861-2241011,
2241116-2241424
Length = 655
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 171 NYVGEKELQADFEGRNPEDSDF 236
N GE+EL D EG+NPE S F
Sbjct: 303 NLQGEEELVWDLEGKNPEFSVF 324
>08_01_0618 -
5394841-5395036,5395179-5395244,5395727-5395769,
5396119-5396238,5396653-5396731,5396910-5397177,
5397262-5397305,5397431-5397502,5397756-5397825,
5397929-5397999
Length = 342
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 84 KNKEIDTNSERTKEQDSGSEKDSDFDSD 167
K E D N E +EQD+G E DSDF D
Sbjct: 46 KEDEEDDNYE--EEQDAGDEFDSDFGED 71
>04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713
Length = 236
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 75 PNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGN 173
PN ++ + KE+D G D D+DS+GN
Sbjct: 80 PNTNETKVLRLLKSLKERDGGVYLDEDYDSEGN 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,926,100
Number of Sequences: 37544
Number of extensions: 314939
Number of successful extensions: 1126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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