Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0418
(840 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11440.1 68414.m01314 expressed protein 35 0.077
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 34 0.10
At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar... 34 0.14
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 31 1.3
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 31 1.3
At5g03830.1 68418.m00352 expressed protein hypothetical protein ... 29 2.9
At1g27300.1 68414.m03326 expressed protein 29 2.9
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 29 2.9
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 29 3.8
At5g64940.2 68418.m08169 ABC1 family protein contains Pfam domai... 29 3.8
At5g64940.1 68418.m08168 ABC1 family protein contains Pfam domai... 29 3.8
At4g33740.2 68417.m04791 expressed protein 29 3.8
At4g33740.1 68417.m04790 expressed protein 29 3.8
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO... 29 3.8
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO... 29 3.8
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO... 29 3.8
At4g11320.1 68417.m01828 cysteine proteinase, putative contains ... 29 3.8
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ... 29 3.8
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 29 5.1
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 29 5.1
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 29 5.1
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138... 28 6.7
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 28 6.7
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 28 6.7
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 6.7
At1g03820.1 68414.m00363 expressed protein similar to arabinogal... 28 6.7
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 28 8.9
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 28 8.9
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 28 8.9
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 28 8.9
At2g34640.1 68415.m04255 expressed protein 28 8.9
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 28 8.9
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 28 8.9
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 28 8.9
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 28 8.9
>At1g11440.1 68414.m01314 expressed protein
Length = 363
Score = 34.7 bits (76), Expect = 0.077
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = +3
Query: 57 VYFAKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 224
V FA+ P ++ K I+T E+ +EQD +++S+ + DG+ E+E + D E + E
Sbjct: 198 VSFAE-PVEEVKPIETIKEQEQEQDEDYDEESEDEDDGDDDDEEEEEGDEEAKEEE 252
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 69 KMPNKKNKEIDTNSERTKEQ----DSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
K P KK E+ T+ E +E+ D GSE SD SDG+ G + D + + +D D
Sbjct: 49 KKPLKK-PEVSTDEEEEEEENEQSDEGSESGSDLFSDGDEEGNNDSDDDDDDDDDDDDD 106
>At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar to
p21Cip1-binding protein TOK-1beta (GI:7339688) [Homo
sapiens]; similar to BRCA2 and Cip1/p21 interacting
protein (GI:25989375) [Homo sapiens]
Length = 326
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 159 DSDGNYVGEKELQADFEGRNPEDSDFHGIKQL 254
DS ++++QADFE +P+ +DFHG+K L
Sbjct: 71 DSSDEEDSQEDVQADFEFFDPKPTDFHGVKIL 102
Score = 31.1 bits (67), Expect = 0.95
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 523 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKA 648
++ +L +Q GL++++R++N+P + PL+ L E+ A
Sbjct: 179 LEMLLEKKAQDVGLLVSQRVMNLPPQLLPPLYDGLFDEVSWA 220
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 75 PNKKNKEIDTNSERTKEQD-SGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
P K+ KE ++ E +KE++ EK++ + N + E E++ E + E ++
Sbjct: 353 PEKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQEGNE 406
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 AKMPNKKNKEIDTNSERTKEQ--DSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
+K + K E D+NS+ +K+ DS S+ D D N K+ D ++ + SD
Sbjct: 1108 SKSQSLKKNEGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1165
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQ--DSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
+ K + D+NS+ +K+ DS S+ D D N K+ D ++ + SD
Sbjct: 1124 SSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1177
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQ--DSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
+ K + D+NS+ +K+ DS S+ D D N K+ D ++ + SD
Sbjct: 1136 SSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1189
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQ--DSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
+ K + D+NS+ +K+ DS S+ D D N K+ D ++ + SD
Sbjct: 1148 SSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1201
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQAD 203
+ K + D+NS+ +K+ D S S SDG+ + + ++D
Sbjct: 1172 SSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSCSKSQKKSD 1213
>At5g03830.1 68418.m00352 expressed protein hypothetical protein
F4I1.32, Arabidopsis thaliana, PIR:T02406
Length = 265
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +1
Query: 523 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKA 648
++ +L ++ GL++++R++N+P + PL+ L E+ A
Sbjct: 161 LELLLEKKAKDVGLLVSQRVMNLPLQLLPPLYDGLFDEVSWA 202
>At1g27300.1 68414.m03326 expressed protein
Length = 200
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 39 LITSSFVYFAKMPNKKNKE-IDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQ 197
L SS + + PN K KE + T E KE++S S S+G E+ ++
Sbjct: 39 LFLSSLISQLESPNPKGKEDVITGEEEEKEEESADSSPSKGKSEGQRQLEESIE 92
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 99 DTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGR 215
+ NS++ KE GS+ DSD+ DG K+ A GR
Sbjct: 470 EDNSDKEKEVQ-GSDADSDYSEDGEEANGKKQSARGRGR 507
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 99 DTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
D E E + SE DSD+ D + E +++AD G ++ D
Sbjct: 29 DETEEEEDEDTNSSEDDSDWSHDDDDATESDVEADEIGVKGDNDD 73
>At5g64940.2 68418.m08169 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 761
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 42 ITSSFVYFAKMPNKKNKEIDTNSERTKEQDSGSEKDSD--FDSDGNYVGEKELQADFEGR 215
I F+ ++ N I T R + D+ + +D D +G+Y G L + R
Sbjct: 32 IAGIFLPRNRLSYNHNLRIRTRLIRASKDDNVAVEDRDNAVKINGDYNGSARLNGNGSAR 91
Query: 216 NPEDSDFHGIKQL*GN 263
+ DF+G +L GN
Sbjct: 92 KSVNGDFNGSARLNGN 107
>At5g64940.1 68418.m08168 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 761
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 42 ITSSFVYFAKMPNKKNKEIDTNSERTKEQDSGSEKDSD--FDSDGNYVGEKELQADFEGR 215
I F+ ++ N I T R + D+ + +D D +G+Y G L + R
Sbjct: 32 IAGIFLPRNRLSYNHNLRIRTRLIRASKDDNVAVEDRDNAVKINGDYNGSARLNGNGSAR 91
Query: 216 NPEDSDFHGIKQL*GN 263
+ DF+G +L GN
Sbjct: 92 KSVNGDFNGSARLNGN 107
>At4g33740.2 68417.m04791 expressed protein
Length = 227
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
KK+K + N E E+D E D + D N GE+ + D E E+ +
Sbjct: 106 KKSKVENGNHEEEVEKDEEEEVAEDDEEDKNKQGEEVAEEDEEENKHEEDE 156
>At4g33740.1 68417.m04790 expressed protein
Length = 227
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
KK+K + N E E+D E D + D N GE+ + D E E+ +
Sbjct: 106 KKSKVENGNHEEEVEKDEEEEVAEDDEEDKNKQGEEVAEEDEEENKHEEDE 156
>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 487
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 66 AKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFH-- 239
+K + N+++D + KE+ SEK+ + ++ G+ + EK D + E +
Sbjct: 225 SKSVDTTNRKLDDDKVVVKEERGDSEKEEEGET-GDLISEKTDSVDIHKKEDETKPINKS 283
Query: 240 -GIKQL*GN 263
GIK + GN
Sbjct: 284 SGIKNVSGN 292
>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 66 AKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFH-- 239
+K + N+++D + KE+ SEK+ + ++ G+ + EK D + E +
Sbjct: 225 SKSVDTTNRKLDDDKVVVKEERGDSEKEEEGET-GDLISEKTDSVDIHKKEDETKPINKS 283
Query: 240 -GIKQL*GN 263
GIK + GN
Sbjct: 284 SGIKNVSGN 292
>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 66 AKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFH-- 239
+K + N+++D + KE+ SEK+ + ++ G+ + EK D + E +
Sbjct: 225 SKSVDTTNRKLDDDKVVVKEERGDSEKEEEGET-GDLISEKTDSVDIHKKEDETKPINKS 283
Query: 240 -GIKQL*GN 263
GIK + GN
Sbjct: 284 SGIKNVSGN 292
>At4g11320.1 68417.m01828 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 371
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 457 GTDQRIAYKTISGECRSRTKELIKYILADDSQHTGLVINERILNIPAAISVPLFA 621
GTD YK ++G C R KE K ++ D + L N+ + A P+ A
Sbjct: 225 GTDNDYPYKALNGVCEGRLKEDNKNVMIDG--YENLPANDEAALMKAVAHQPVTA 277
>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 364
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 457 GTDQRIAYKTISGECRSRTKELIKYILADDSQHTGLVINERILNIPAAISVPLFASLQT 633
GTD YK ++G C R KE K ++ D + L N+ + A P+ A + +
Sbjct: 218 GTDNDYPYKAVNGVCDGRLKENNKNVMIDG--YENLPANDESALMKAVAHQPVTAVIDS 274
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 96 IDTNSERTKEQDSG-SEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 233
I+ + + E D G SE+D + D++ + G+ E D EG N ED D
Sbjct: 41 IEDDEVDSMEDDEGESEEDDEGDTEEDDEGDSE--EDDEGENKEDED 85
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQDS------GSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFH 239
N +N E SE ++ D+ G +KDS D G V +K+ + R+ +
Sbjct: 266 NSRNMEQQNASEAHEDDDNDDNNNRGRDKDSSSDERGTEVRQKKRRKRSTSRSTQHPSSS 325
Query: 240 GIKQL*GNC 266
G + GNC
Sbjct: 326 GANKNNGNC 334
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 90 KEIDTNSERTKEQDSGSEKDSDFDSDG--NYVGEKELQADFE 209
+E D S T+++D G +D D D DG ++ ++++ D E
Sbjct: 203 EEQDNVSHETEKEDDGDYEDEDEDDDGDEDFTADEDVSLDEE 244
>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 677
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 830 NPIXDKSSLGRLHPTSKLSNSFAT*RLLFWIGKSTSETLQ 711
+P+ + S + R HP S +N T R W+ + SE L+
Sbjct: 576 HPVPECSCITRTHPVSNATNLGVTHRCPQWVDGAVSERLK 615
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 84 KNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGR 215
++++ D +R +E+D G ++D D D D + E+E + + R
Sbjct: 78 RDRDRDRERDRDRERDRGRDRDRDRDRDRDRDRERERDRERDRR 121
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 33 ISLITSSFVYFAKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEG 212
ISL +S F +K + + D++ K+ ++G +KD + D D ++E D +
Sbjct: 23 ISLESSPFHEDSKSRESHDLKKDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRDRDR 82
Query: 213 RNPEDSD 233
D D
Sbjct: 83 EKSRDRD 89
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 60 YFAKMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVG 182
YF N+++ E DT K SGS+ + S YVG
Sbjct: 299 YFRDYENREDTETDTADRTEKSAASGSQDIGNHKSTTKYVG 339
>At1g03820.1 68414.m00363 expressed protein similar to
arabinogalactan-protein; AGP (GI:1087015) {Pyrus
communis}; similar to Protein E6. (SP:Q01197) {Gossypium
hirsutum}
Length = 222
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQL* 257
N TN+ + G+E++ SD + + D GRN E++ G +
Sbjct: 136 NNNGYTYTTNNYNDNGRGYGNEEEKQGMSDTRVMENGKYFYDTRGRNSENTPSRGYENAR 195
Query: 258 GNCF*NQMLTLE 293
GN N+ T+E
Sbjct: 196 GNDHTNEFETME 207
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFE 209
+ ++E +++ E E+D SEK D D D + E+E D E
Sbjct: 70 ESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEE 112
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFE 209
+ ++E +++ E E+D SEK D D D + E+E D E
Sbjct: 153 ESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEE 195
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 84 KNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQAD 203
K +E D + +R KE+D E++ D + EKE D
Sbjct: 84 KEREKDKSRDRVKEKDKEKERNRHKDRENERDNEKEKDKD 123
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDS 230
K++ +DT+ E+T ++ + K S +SD Y L + E P DS
Sbjct: 1571 KRDLIVDTDEEKTSKKKAKKHKKSLPNSDIKYKQTSALLDELEPSKPSDS 1620
>At2g34640.1 68415.m04255 expressed protein
Length = 527
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFE 209
++N ++TN E + +DS E+++D SDG + E + + E
Sbjct: 156 EENVTVETNDEVSDSEDSSEEEEND-SSDGFVTYKNEFEREEE 197
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 84 KNKEIDTNSERTKEQDSGSEKDSDFDSD 167
KN E+D N+ D G+E D D D +
Sbjct: 280 KNNEVDDNNNNKNLDDHGNEDDDDDDEN 307
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 78 NKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEK--ELQADFEGRNPEDSDFHGIKQ 251
++K KE+ + E + E D + DG V E E+ + + P+D + G K+
Sbjct: 365 SEKEKEVAESEIGVAESEKDKEVPQDDEMDGGKVAESDGEMDGEKDKEVPQDDEMDGEKE 424
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 KEIDTNSERTKEQDS--GSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQL 254
++ T + TK+Q G K S D + E ++ GRNP D+D IK +
Sbjct: 424 RKTPTKFDETKKQSVAVGYLKKSGLDGEKKLDTETAFDSEMSGRNPYDADDSIIKSI 480
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 81 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYV--GEKELQAD 203
KKNK + N R+ E++ DSD +SD Y G K+L +D
Sbjct: 235 KKNKLVVDNQMRSGEENGDVHYDSD-NSDSGYFRNGPKKLDSD 276
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,335
Number of Sequences: 28952
Number of extensions: 281293
Number of successful extensions: 1212
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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