Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0417
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    28   1.5  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   5.9  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   7.8  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +2

Query: 458 SET*LLYRVNVANTYIIVVLFFSFANWMEASRKIRENELLLCVRDSSSDSTLDEFKVLI* 637
           S+  L Y   + N    + L  + +N  E  RK+ EN+ +  +  ++  S+++E   LI 
Sbjct: 69  SDKVLWYPQTIPNACGTIGLLHAVSNG-ELRRKVNENDFIKSLIRTAEGSSIEERAKLI- 126

Query: 638 KENKILFFLHAACEFP 685
           +++K L  LHAA   P
Sbjct: 127 EDSKELEALHAAFAGP 142


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 788 KNETWFACSVI*F--LNTRLPWKPRLSLFLSFMLYQKETRRP 669
           K + W +C +I F  L    PW   +S    ++LY+K+  RP
Sbjct: 193 KVDVW-SCGIILFALLLGNTPWDEAISNTGDYLLYKKQCERP 233


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 753 IFKYSITLET-KTFFVSFIYALSKGNSQ 673
           +F+ +IT ET +TFF  F+  +  GNSQ
Sbjct: 468 VFRDNITGETPETFFDCFLPTIEAGNSQ 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,435
Number of Sequences: 5004
Number of extensions: 67726
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)