Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0417
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0381 - 2961422-2963917                                           31   0.89 
04_03_0908 + 20743436-20744018,20744128-20744168,20744320-207445...    29   6.2  
12_02_0504 - 19771191-19772134,19772210-19774892                       28   8.3  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    28   8.3  

>01_01_0381 - 2961422-2963917
          Length = 831

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 486 FTLYSNYVSEKLSMKYYQANGSFIEW-IRFRLVFS-A*SKCYFFAKLHNR 343
           F +Y +  +  L    +Q+NG F++W  R+++    A   CY     H+R
Sbjct: 575 FLVYEHMPNRSLDTHLFQSNGKFLDWNTRYQIALGVARGLCYLHESCHDR 624


>04_03_0908 +
           20743436-20744018,20744128-20744168,20744320-20744588,
           20744793-20744832
          Length = 310

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 159 SSPLSGVPTVEGGSQITQFQ-NFVLLFPSVLC 251
           S P+SG   VEGGS  + F  N V++   +LC
Sbjct: 20  SQPVSGATIVEGGSPGSNFDANIVMILAVLLC 51


>12_02_0504 - 19771191-19772134,19772210-19774892
          Length = 1208

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +2

Query: 545 ASRKIRENELLLCVRDSSSDSTLDEFK 625
           A+  IR+N+LLL + D+  D++L+E+K
Sbjct: 246 ATDNIRDNKLLLVLDDAWDDTSLEEWK 272


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 709 FFHLCF-IKRKLAGRVQEKQNFIFFLNQNFKFVECAI 602
           F  LC  I   LAG   EK  F FF ++N K++EC +
Sbjct: 820 FVSLCILINSALAGDETEKAPFSFF-DRNGKYIECLL 855


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,342,243
Number of Sequences: 37544
Number of extensions: 356899
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)