Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0417
         (854 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56852| Best HMM Match : CemA (HMM E-Value=1.5)                      32   0.68 
SB_39898| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_24546| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_56852| Best HMM Match : CemA (HMM E-Value=1.5)
          Length = 545

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 LLKSNQATYSSPLSGVPTVEGGSQITQFQNFVLLFPSVL 248
           +L +N ATY    S  PT    SQ+  F+NF    PSVL
Sbjct: 347 VLLANLATYFKHASKEPTSAWQSQLAHFENFFRKLPSVL 385


>SB_39898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 112 RAIFVVTCLSLIKLPTRLHCLGCLRSRGDHKLRNFKILCCYFRAFFVLLIKS 267
           R   +V+CL LI    RLH L  L  RG   + +  +   YF  FF + I S
Sbjct: 28  RVNHIVSCLRLINFVIRLHGLFLLLIRGIFLIASVTLDDNYFLGFFAIGITS 79


>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 465 VSEKLSMKYYQANGSFIEWIRFRLVFS---A*SKCYF 364
           ++EKLS+K  +A  S I WIR  L F+      KC+F
Sbjct: 809 LAEKLSIKNGEAYASVISWIRIGLSFAILRTVHKCHF 845


>SB_24546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 494 NTYIIVVLFFSFANWMEASRKIRENELLLCVRDSSSDSTLDEF 622
           NTY + +  F   ++     K+  N ++L  RDSSS+   + F
Sbjct: 16  NTYRVYIARFQIQSFNSRIEKVGRNRIILSRRDSSSEWRQETF 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,525,556
Number of Sequences: 59808
Number of extensions: 450390
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)