Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0417
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical ...    32   0.60 
Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical
           protein T08B6.2 protein.
          Length = 388

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = -1

Query: 416 LSGFAFD*SFQHEANVIFLRNYITVSNFKEENSE 315
           ++G + D +FQ+ A ++FLRN +T SNF E  ++
Sbjct: 1   MAGDSTDKAFQNFAYLLFLRNILTKSNFSETKNK 34


>Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical
           protein T21B4.1 protein.
          Length = 306

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 133 CLSLIKLPTRLHCLGCLRSRGDHKLRNFKILCCYFRAFFVLLIKSNKVI 279
           C   + +  ++H +   +S+ D  +R   ++ C  + FF++L+  N++I
Sbjct: 181 CPIFVSVRQKIHLISLAQSKPDRYIRYQAVVICASKMFFIVLLFYNQII 229


>Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical
           protein F10F2.7 protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 27/101 (26%), Positives = 42/101 (41%)
 Frame = +3

Query: 186 VEGGSQITQFQNFVLLFPSVLCFVDKK**SNSGNPILLILCKEFTVFFFEV*NGYVVSQK 365
           VEGG+ +  F  +    P+V      K      N   ++LC E+T    +  + Y++ + 
Sbjct: 211 VEGGNVLLAFDGYKYNLPNVAIARVSK------NETAMVLC-EYTPSMTKAESNYLLRRY 263

Query: 366 NNICFMLKRLIESESTQ*TSRLLGNISLKAFLKHNYCTE*M 488
             I +      ES   + TS  + N        HNYCTE M
Sbjct: 264 GEIYYPPLVTSESAYMRTTSSRIRNEE-DPLADHNYCTELM 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,096,795
Number of Sequences: 27780
Number of extensions: 367421
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)