Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0417
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical...    31   1.3  
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical...    31   1.3  
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical...    31   1.3  
At4g20230.1 68417.m02956 terpene synthase/cyclase family protein...    29   5.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    28   6.9  
At1g09770.1 68414.m01096 myb family transcription factor contain...    28   6.9  

>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1057

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 500 YIIVVLFFSFA--NWMEASRKIRENELLLCVRDSSSDSTLDEFKVLI 634
           +II+V F S     WM+ + KIR  E+L+ + D  +    D+F V +
Sbjct: 111 WIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSV 157


>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1080

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 500 YIIVVLFFSFA--NWMEASRKIRENELLLCVRDSSSDSTLDEFKVLI 634
           +II+V F S     WM+ + KIR  E+L+ + D  +    D+F V +
Sbjct: 134 WIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSV 180


>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1057

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 500 YIIVVLFFSFA--NWMEASRKIRENELLLCVRDSSSDSTLDEFKVLI 634
           +II+V F S     WM+ + KIR  E+L+ + D  +    D+F V +
Sbjct: 111 WIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSV 157


>At4g20230.1 68417.m02956 terpene synthase/cyclase family protein
           vetispiradiene synthase, Hyoscyamus muticus,
           PATX:G763421
          Length = 609

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 534 LANEKNKTTIM*VLATFTLYSNYVSEKLSMKYYQANGSFIE 412
           +A E++  T+  +   F  Y +Y+S  +  ++  +NGSF E
Sbjct: 153 MAGEEDLYTVSIIFWVFRRYGHYISSDVFQRFKGSNGSFKE 193


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 310 LHRINSIGLPELLYYFLSTKQRTLGNNNTKF*NCVICD 197
           LH+ N  G P +  + L  ++ TL  N TK   C  CD
Sbjct: 755 LHQ-NCAGFPRMKRHVLHNERLTLVTNETKLFQCAPCD 791


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 479 RVNVANTYIIVVLFFSFANWMEASRKIRENELLLCVRDSSSDSTLDEF 622
           R N + + ++ +  F      EA + I+E    LCV     + TLD+F
Sbjct: 611 RTNRSASQVLAIDDFDENELQEADKMIKEEGKFLCVSMGHENKTLDDF 658


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,890
Number of Sequences: 28952
Number of extensions: 321928
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)