Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0416
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q98PE1 Cluster: EXODEOXYRIBONUCLEASE V ALPHA CHAIN; n=1...    34   2.3  
UniRef50_Q05FQ5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  

>UniRef50_Q98PE1 Cluster: EXODEOXYRIBONUCLEASE V ALPHA CHAIN; n=1;
           Mycoplasma pulmonis|Rep: EXODEOXYRIBONUCLEASE V ALPHA
           CHAIN - Mycoplasma pulmonis
          Length = 694

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 472 VKQNIILAFGKKTDKIESHHSKVLYNVVFSLLFSILPXKIGATSSSRAV 326
           + +NI LA+     K +   SK++  V+F +L + L  K+  T+ SRAV
Sbjct: 605 LNKNISLAYATTVHKFQGSESKIVIFVIFPILMNFLTRKMIYTAFSRAV 653


>UniRef50_Q05FQ5 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 123

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 15  THEKT*LVRRYLAPRCSAITWAK--LKKKFFLMTLSRSTIVS 134
           T +K+ L  +YL   C   TW K  +KKK FL   S S I+S
Sbjct: 26  TQKKSFLKNKYLLKNCLINTWIKIIIKKKIFLFGYSNSLILS 67


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,293,576
Number of Sequences: 1657284
Number of extensions: 9664856
Number of successful extensions: 16095
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16094
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)