Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0416
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    29   0.40 
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   3.7  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.6  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 22  KKHDSCGVTSLRGVP-RSRGLN*KKSFFL*RCHVQLLSVN 138
           K  D+CG    +G+P  ++ +  +K+F L R H   LS N
Sbjct: 57  KSTDNCGTVDFQGIPWGNKAIGKRKNFRLYRLHTYSLSCN 96


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 48  LAPRCSAITWAKLKKKFFLMTLSRS 122
           L  RC  I W  L +K FL T  +S
Sbjct: 331 LLDRCEIILWRNLFRKVFLFTFEQS 355


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 282 TLDPSTRPIP-SRYVYTDLKLALFC 211
           +LDPST PIP  R    D  +AL C
Sbjct: 101 SLDPSTDPIPVYRDALLDFAIALAC 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,526
Number of Sequences: 5004
Number of extensions: 44908
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)