Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0416
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512...    29   3.8  
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719           28   6.6  
10_08_0296 - 16595193-16595222,16595923-16596067,16597387-165974...    27   8.7  
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    27   8.7  

>07_01_0680 +
           5128023-5128212,5128629-5128667,5129496-5129637,
           5129727-5129847,5129951-5130013,5130114-5130203,
           5130572-5130619,5131114-5131260
          Length = 279

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  KKVFSYDAVTFNYCQ*TDFTDNSLHINAVLGMAFCL 196
           K  ++ D  TFNY     F+ N + I  + G+A+C+
Sbjct: 45  KFTYNCDGHTFNYLVEDGFSSNRIGILGIQGLAYCV 80


>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
          Length = 780

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 445 GKKTDKIESHHSKVLYNVVFSLLFSILPXKIGATSSSRAVAIKA 314
           GK  D ++ HH  ++ NV++SL+  +    I     SR + + A
Sbjct: 719 GKVLDALKPHHGLLMLNVIYSLIHWLRIWAILQKPDSRDMVVAA 762


>10_08_0296 -
           16595193-16595222,16595923-16596067,16597387-16597488,
           16597630-16597685,16598245-16598399,16598755-16598918,
           16599116-16599237,16599542-16599754,16599874-16600023,
           16600909-16600959
          Length = 395

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 388 IPHYKELLNDETQFYQFFCQM 450
           +P +K+L NDE QF   FC +
Sbjct: 275 LPQFKDLPNDEQQFKAAFCYL 295


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 563 SMNPSRPYRTCDVC 604
           S NP +PYR CD C
Sbjct: 677 SPNPGKPYRVCDSC 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,288,024
Number of Sequences: 37544
Number of extensions: 251757
Number of successful extensions: 454
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)