Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0416
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.44 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 22  KKHDSCGVTSLRGVP 66
           K HD+CGV +L G+P
Sbjct: 324 KIHDTCGVHNLHGMP 338


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 179 LGPRLYVNYCL*SRFTDN 126
           LG   Y N+C   R+ DN
Sbjct: 611 LGSSAYPNFCAFGRYVDN 628


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 133 LTIVERDSVIRKNFFFSLAHVIAEHLGA 50
           LT+V   SV+R    ++   +IAE  G+
Sbjct: 437 LTVVSGGSVLRATKEYNTVPIIAESYGS 464


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 133 LTIVERDSVIRKNFFFSLAHVIAEHLGA 50
           LT+V   SV+R    ++   +IAE  G+
Sbjct: 437 LTVVSGGSVLRATKEYNTVPIIAESYGS 464


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 133 LTIVERDSVIRKNFFFSLAHVIAEHLGA 50
           LT+V   SV+R    ++   +IAE  G+
Sbjct: 437 LTVVSGGSVLRATKEYNTVPIIAESYGS 464


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 238  VYVTRWNGTGT 270
            +YVT +NG GT
Sbjct: 1435 IYVTAYNGIGT 1445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,654
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)