Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0416
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12350.1 68418.m01453 zinc finger protein, putative / regulat...    27   9.6  
At2g25100.1 68415.m03003 ribonuclease HII family protein contain...    27   9.6  

>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1062

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 569 NPSRPYRTCDVC 604
           NP++PYR CD C
Sbjct: 689 NPNKPYRVCDKC 700


>At2g25100.1 68415.m03003 ribonuclease HII family protein contains
           Pfam profile: PF01351 ribonuclease HII
          Length = 296

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 221 PCFVSFDDTNKKPFLGPRLY-VNYC 150
           PC +  D+  + P LGP +Y   YC
Sbjct: 14  PCLMGIDEAGRGPVLGPMVYGCMYC 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,951,208
Number of Sequences: 28952
Number of extensions: 219195
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)