Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0414
         (840 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    27   0.24 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.99 
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    23   4.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   5.3  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 685 HMIQSTFINLLFVCSGWVYANSALEVISWN 774
           H+    + N+L+ C   VY NSA+  I +N
Sbjct: 323 HLEIEKYYNILYFCRIMVYLNSAINPILYN 352


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 332 GAAVVTMYTETLELISQGMWRIYVVDSMGSSNHLTQG 222
           G A +  Y E +EL  +G W++ V D    + H+ +G
Sbjct: 292 GEAGMLGYNEIVELQKEGGWKV-VWDDTQKNTHMYKG 327


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 598 LMFLKRYGSHF 566
           L F+++YGSHF
Sbjct: 84  LKFIRKYGSHF 94


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 779 FVFQEITSNAEFA*THPEHTNSRFIN 702
           F  Q +TS  +F   HP  T+   +N
Sbjct: 244 FTEQSVTSTFDFLSLHPAETSMNDVN 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,364
Number of Sequences: 336
Number of extensions: 4016
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)