Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0414
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)              28   8.2  
SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)         28   8.2  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 306 SIHSYNGCPTLQTETHYCFTAEISRVVVRTHEKQFRVLVNRKIKT 440
           S++     P L  + HYC +  I   VVR   K+     +RKI+T
Sbjct: 57  SVYEVYALPKLYVKLHYCVSCAIHSKVVRNRSKE-----DRKIRT 96


>SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)
          Length = 531

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 350 RFSLKGGAAVVTMYTETLELISQGMWRIYVVDSMGSSNHLTQGGL 216
           R S K GA  V +Y++  E+  +G+ ++Y + +   S  +T+G +
Sbjct: 198 RASQKNGAVGVILYSDPSEVACEGLDKVYPLYNWMPSTGVTRGNI 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,643,337
Number of Sequences: 59808
Number of extensions: 446043
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)