BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0414 (840 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical... 29 4.1 AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical... 29 4.1 AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical ... 29 5.4 >AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical protein D1007.5b protein. Length = 402 Score = 29.1 bits (62), Expect = 4.1 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = -2 Query: 536 NQNEALKKSNIYIEIITIEMPLRLLKVKLCIISFNFPVHQNPK---LFFVCPYHHPAYFC 366 NQ++ ++ S + +E I+ P+ L + + SFN H P L+F+ P A+ Sbjct: 121 NQSQFIQSSLMIVEYAAIKTPVMTLIITSFLFSFNRVCHDFPSRSVLWFLFPILFYAFIF 180 Query: 365 REAVM 351 R ++ Sbjct: 181 RSEII 185 >AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical protein D1007.5a protein. Length = 477 Score = 29.1 bits (62), Expect = 4.1 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = -2 Query: 536 NQNEALKKSNIYIEIITIEMPLRLLKVKLCIISFNFPVHQNPK---LFFVCPYHHPAYFC 366 NQ++ ++ S + +E I+ P+ L + + SFN H P L+F+ P A+ Sbjct: 121 NQSQFIQSSLMIVEYAAIKTPVMTLIITSFLFSFNRVCHDFPSRSVLWFLFPILFYAFIF 180 Query: 365 REAVM 351 R ++ Sbjct: 181 RSEII 185 >AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical protein Y43C5A.2 protein. Length = 452 Score = 28.7 bits (61), Expect = 5.4 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%) Frame = +1 Query: 379 GWWYGHTKNNF-GFW 420 GWWYG NN GFW Sbjct: 371 GWWYGSCGNNLNGFW 385 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,980,158 Number of Sequences: 27780 Number of extensions: 354486 Number of successful extensions: 750 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 745 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 750 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2077023564 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -