Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0413
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    70   2e-12
11_03_0068 + 9564354-9565180,9566658-9568704                           30   2.7  
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779...    30   2.7  
11_06_0754 - 26935647-26937780,26940890-26941827                       29   4.8  
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968...    28   8.3  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 32/77 (41%), Positives = 54/77 (70%)
 Frame = +3

Query: 288 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 467
           +G+Q+++P+RG     + LK+ GDLGQ++   Y+  D +SI   +  SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 468 TKNFKYNDVHVDGVEEL 518
           T+N+ +++V+    E+L
Sbjct: 61  TRNYGFDEVNHHMAEQL 77



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 24/62 (38%), Positives = 34/62 (54%)
 Frame = +2

Query: 539 GVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSEDR 718
           G+ RFI +S L A           PS    +K  GE +V +E+P ATI+R + + G+EDR
Sbjct: 86  GIMRFIQVSSLGASA-------SSPSRMLRAKAAGEESVLKEFPEATIMRPATMIGTEDR 138

Query: 719 FL 724
            L
Sbjct: 139 IL 140


>11_03_0068 + 9564354-9565180,9566658-9568704
          Length = 957

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +3

Query: 303 ILPYRGDFYDAQRLKVCGDLGQV-LFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNF 479
           ILP       A+ L V G    + L + +H+L   +I    +  N  +  +GR ++ K  
Sbjct: 548 ILPATMVLSSARSLVVYGSTEHIPLISAFHVLRTIAIESNDKLKNCYLRDIGRLFQLKCL 607

Query: 480 KYNDVHVDGVEELPES-AEKKELR 548
           +  +V   G+ ELPE   E +EL+
Sbjct: 608 RLREV---GISELPEEIGELQELQ 628


>03_05_0714 -
           27076881-27077218,27077332-27077482,27077768-27077903,
           27078309-27078457,27079141-27079267,27080033-27080172,
           27080264-27080329,27080760-27080901,27081021-27081115,
           27081640-27082140
          Length = 614

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 172 NLAAYKRGTGGRSSFNGIVATVFGCTGLSDAMCATNWEKLVPS*FYHTEAIS 327
           NLA +K      +S NG++ATV     L D  C T   +L+ + F    ++S
Sbjct: 277 NLACHKSLANAITSHNGLIATVVDQLFLDDPGCLTETFRLLSTIFQSNASMS 328


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 536 EGVERFIHLSYLNAEEHPKPLVL 604
           EG+++ + LSY N  EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468


>03_02_0592 -
           9687700-9687933,9688515-9688591,9688891-9688999,
           9689162-9689260,9689368-9689454,9689570-9689630,
           9689739-9689813,9689936-9689961
          Length = 255

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 480 KYNDVHVDGVEELPESAEKKELRDSFI 560
           KY D H +G   LPE  EK++  D  I
Sbjct: 102 KYIDSHFEGPALLPEDPEKRQFADELI 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,175,256
Number of Sequences: 37544
Number of extensions: 446795
Number of successful extensions: 1018
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)