Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0413
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   5e-29
SB_20141| Best HMM Match : BTK (HMM E-Value=6.2)                       31   1.2  
SB_7318| Best HMM Match : YTV (HMM E-Value=4.2)                        29   3.7  
SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score =  125 bits (301), Expect = 5e-29
 Identities = 52/94 (55%), Positives = 76/94 (80%)
 Frame = +3

Query: 255 VGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSN 434
           +GRYV N+LG++GTQL +PYRGD +D + L++ GDLGQ+ F  +HL DEESIAK V++SN
Sbjct: 32  LGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLGQIDFFDFHLKDEESIAKMVKHSN 91

Query: 435 VVINLVGRDYETKNFKYNDVHVDGVEELPESAEK 536
           VV+NL+GR +ET+NF + +VHVDG   + ++A++
Sbjct: 92  VVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKE 125



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 32/64 (50%), Positives = 41/64 (64%)
 Frame = +2

Query: 533 EEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSE 712
           E GVER IH+S LNA        +  PS +  +K LGE AVREE+P ATI+R   ++G E
Sbjct: 125 EAGVERLIHVSALNA-------AVDSPSKFLHTKALGEQAVREEFPNATILRPGTVFGHE 177

Query: 713 DRFL 724
           D+FL
Sbjct: 178 DKFL 181



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +1

Query: 187 KRGTGGRSSFNGIVATVFGCTG 252
           K+GTGGRSSFNG+ ATVFG TG
Sbjct: 9   KKGTGGRSSFNGVSATVFGATG 30


>SB_20141| Best HMM Match : BTK (HMM E-Value=6.2)
          Length = 254

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 607 ETVCLENKQVFGRVCSQRGIPNCHYY 684
           E  CL NK++F  + S+RG+P C  Y
Sbjct: 96  ERDCLSNKRLFSCMRSRRGLPGCQSY 121


>SB_7318| Best HMM Match : YTV (HMM E-Value=4.2)
          Length = 127

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 273 CTHSVRQSGATENCGYDAVKATAATST 193
           C +  R +GAT+  GY+  +AT AT T
Sbjct: 99  CYNVTRATGATKTKGYNVTRATVATKT 125


>SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 601 PEETVCLENKQVFGRVCSQRGIPNCH 678
           P E++C +  Q+F  VC+  GIP  H
Sbjct: 131 PTESLCQKQLQIFIEVCNYLGIPIAH 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,240,781
Number of Sequences: 59808
Number of extensions: 538088
Number of successful extensions: 1186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)