Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0413
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    94   1e-19
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   7.4  
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    28   9.8  
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 46/88 (52%), Positives = 59/88 (67%)
 Frame = +3

Query: 255 VGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSN 434
           +G  V NK  K G+Q+I+PYR D Y  +  KV G+LGQVL+ P+ L+DEESI KAV+YSN
Sbjct: 71  LGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRKAVKYSN 130

Query: 435 VVINLVGRDYETKNFKYNDVHVDGVEEL 518
           VVINL+G    T  + Y DV+  G   L
Sbjct: 131 VVINLIGTRVPTGKYNYYDVNDTGARRL 158



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 36/72 (50%), Positives = 45/72 (62%)
 Frame = +2

Query: 533 EEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSE 712
           E GVE+F+HLS L A   P+       S +  SK LGE AVREE+P ATIIR S IYG  
Sbjct: 164 EMGVEKFVHLSALGATTQPQKGHFVAKSQFLHSKGLGEVAVREEFPEATIIRPSVIYGEL 223

Query: 713 DRFLRSLVNKMR 748
           D F++  V++ R
Sbjct: 224 DGFIQYYVSRWR 235



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +1

Query: 85  QATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTG 252
           QA S +   N S +V   + A+         A +++G GGR+SF+G V TVFG +G
Sbjct: 14  QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFGASG 69


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 189 LICCKVGFTIRTVVSGFDVHNTHRPIQMK 103
           L C KV  ++RT V   + H+TH  +Q++
Sbjct: 29  LTCRKVCRSLRTAVDKIETHSTHLTVQLR 57


>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 435 VVINLVGRDYETKNFKYNDVHVDGVEELPESAEKKELRD 551
           +++ L+G + E KN   ND+     ++LP    K+ LRD
Sbjct: 745 IILQLLGAEKEPKNRPENDMDAVMRKDLPAIQPKRGLRD 783


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 435 VVINLVGRDYETKNFKYNDVHVDGVEELPESAEKKELRD 551
           +++ L+G + E KN   ND+     ++LP    K+ LRD
Sbjct: 745 IILQLLGAEKEPKNRPENDMDAVMRKDLPAIQPKRGLRD 783


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 254 CRTLCVQQIGKNWYPVNFTIQRRFL*CPKVESVRRFRPGPV 376
           C    +  I +  Y VN T+Q   + CP VES    +P PV
Sbjct: 661 CEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPV 701


>AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical
           protein F38G1.3 protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 318 LCMVKLTGYQFFPIC----CTHSVRQSGATENCGYDAVKATAATSTSLICC 178
           +C++  T  QF P+     CT+ V      E+C  D ++      +SLI C
Sbjct: 13  ICLLT-TAVQFIPLSSTINCTYCVEARSTYEHCFKDVIECAYRDPSSLIIC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,432,985
Number of Sequences: 27780
Number of extensions: 406581
Number of successful extensions: 1068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)