Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0413
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   1.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 462 YETKNFKYNDVHVDGVEEL 518
           + T +++ ND+H +GV+ +
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 462 YETKNFKYNDVHVDGVEEL 518
           + T +++ ND+H +GV+ +
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 462 YETKNFKYNDVHVDGVEEL 518
           + T +++ ND+H +GV+ +
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 611 VSSGQEVSDVLQHLNKTDE*ISQLLLLCRFWQFFYTINVNIIVFEI 474
           + SGQ +SD +    KTD    Q+L   R     Y IN +  + E+
Sbjct: 263 LGSGQYISDFVGSCRKTD----QILYFIRGCLQTYLINASTYLNEV 304


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 611 VSSGQEVSDVLQHLNKTDE*ISQLLLLCRFWQFFYTINVNIIVFEI 474
           + SGQ +SD +    KTD    Q+L   R     Y IN +  + E+
Sbjct: 301 LGSGQYISDFVGSCRKTD----QILYFIRGCLQTYLINASTYLNEV 342


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 641 PNTCLFSKQTVSSGQE 594
           PNTC     +VS+G+E
Sbjct: 592 PNTCKVIASSVSAGEE 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,084
Number of Sequences: 438
Number of extensions: 4255
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)