Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0412
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 173 2e-44
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 173 3e-44
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.74
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.9
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 6.9
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 9.1
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 9.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 173 bits (422), Expect = 2e-44
Identities = 84/137 (61%), Positives = 98/137 (71%)
Frame = +2
Query: 254 RPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASY 433
RP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+
Sbjct: 83 RPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASF 142
Query: 434 VNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLPRDQRWDVVV 613
VNIPVIALC+ P+ K SIG W+LLAREVLRLRG + R W+V+
Sbjct: 143 VNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMP 202
Query: 614 DLFFYRDPEESEKDEQQ 664
DL+FYRDPEE E++E+Q
Sbjct: 203 DLYFYRDPEEIEREEEQ 219
Score = 98.7 bits (235), Expect = 8e-22
Identities = 43/75 (57%), Positives = 58/75 (77%)
Frame = +3
Query: 36 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLXARAVV 215
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVL AR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 216 AIENPADVFVISSGP 260
IENPADV VISS P
Sbjct: 70 TIENPADVCVISSRP 84
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 173 bits (420), Expect = 3e-44
Identities = 84/142 (59%), Positives = 98/142 (69%)
Frame = +2
Query: 254 RPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASY 433
R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+
Sbjct: 82 RTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASF 141
Query: 434 VNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLPRDQRWDVVV 613
VNIPVIALC+ P K SIG +W+LLAREVLR+RG L R WDV+
Sbjct: 142 VNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMP 201
Query: 614 DLFFYRDPEESEKDEQQAKEQA 679
DL+FYRDPEE E++E+ K A
Sbjct: 202 DLYFYRDPEEVEREEEAKKAAA 223
Score = 95.1 bits (226), Expect = 1e-20
Identities = 39/77 (50%), Positives = 59/77 (76%)
Frame = +3
Query: 24 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLXA 203
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVL A
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 204 RAVVAIENPADVFVISS 254
R + IENPADV V+S+
Sbjct: 65 RVIATIENPADVCVVST 81
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.74
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -3
Query: 621 NKSTTTSQRWSRG---STPRSLSTSRANNHHXKPIE 523
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 582 FPVTSAGML--WLICSSTVTLKKVKRM 656
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 127 MSTNDVLMVPM*STCVVPGKNLFWXLVL 210
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 253 DEMTNTSAGFSMATTARAXRTSFSQVRRKLITWVPS 146
DE GF A A T+F + R L T VPS
Sbjct: 366 DEDYEFMQGFESAAGKLAEGTAFHDIERSLFTIVPS 401
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = -2
Query: 388 YNQETRFTECSLDLVSKSTWCETSRNRRSTGVRXKLQYSTLTEGPDEM 245
Y Q +C+++ +S +CE S R + Y ++ + EM
Sbjct: 157 YGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQLISYMSILDPKREM 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,441
Number of Sequences: 5004
Number of extensions: 73020
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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